Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014533_P001 | Maize | extracellular | 90.65 | 90.06 |
| GSMUA_Achr10P... | Banana | nucleus | 26.45 | 65.08 |
| TraesCS7D01G432900.1 | Wheat | nucleus | 65.81 | 64.35 |
| TraesCS7A01G443800.1 | Wheat | nucleus | 65.48 | 64.04 |
| TraesCS7B01G342500.1 | Wheat | nucleus | 65.48 | 64.04 |
| HORVU7Hr1G100830.1 | Barley | plastid | 66.13 | 55.11 |
| Os06t0687500-01 | Rice | plastid | 38.71 | 54.79 |
| GSMUA_Achr9P11330_001 | Banana | nucleus | 53.23 | 51.72 |
| Solyc02g093120.2.1 | Tomato | nucleus | 31.61 | 51.58 |
| VIT_07s0031g00180.t01 | Wine grape | nucleus, plastid | 51.61 | 48.05 |
| PGSC0003DMT400010226 | Potato | nucleus | 48.39 | 47.47 |
| KRH77037 | Soybean | nucleus | 48.06 | 44.74 |
| AT2G42240.4 | Thale cress | nucleus | 42.26 | 43.38 |
| KRH28438 | Soybean | nucleus | 46.77 | 42.9 |
| GSMUA_Achr10P... | Banana | nucleus | 35.16 | 42.08 |
| CDY22555 | Canola | nucleus | 38.06 | 35.65 |
| KXG19320 | Sorghum | nucleus | 32.58 | 33.67 |
| EES14795 | Sorghum | plastid | 27.42 | 26.56 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:8063776 | UniProt:C5Z8C2 | EnsemblPlants:EER88849 | ProteinID:EER88849 |
| ProteinID:EER88849.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45381 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3010G237900 | SUPFAM:SSF54928 | unigene:Sbi.8201 | UniParc:UPI0001A890D1 |
| RefSeq:XP_002437482.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:58017656..58025166
Molecular Weight (calculated)
33551.3 Da
IEP (calculated)
9.136
GRAVY (calculated)
-0.437
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASYFNHSS SSYPPPPPPP GTSPYGAYRH AYPPAPAPAP PAFYGAYYDR AEQALPARDE LRTLFIAGLP ADAKPREVYN LFRDFPGYVS SHLRTGKSSQ
101: AYAFAVFADQ QSALTALSGT NGMVFDLEKN CSLHVDLAKS NSRSKRLRSD DTSPYSPEKR TRKPRGFPDS GAGSNIYISG MGSSSHSLSG YPSAQSYTSL
201: ESSASLSKDP STFAPQINPP CPTLFVANLG PACSEQELID VFSSCAGFVK LKMQNKLGAP VAFVDFKDSI SSTEAINRLQ GVILYSSLGE GMRLEYAKSR
301: MGLWKRDKHP
101: AYAFAVFADQ QSALTALSGT NGMVFDLEKN CSLHVDLAKS NSRSKRLRSD DTSPYSPEKR TRKPRGFPDS GAGSNIYISG MGSSSHSLSG YPSAQSYTSL
201: ESSASLSKDP STFAPQINPP CPTLFVANLG PACSEQELID VFSSCAGFVK LKMQNKLGAP VAFVDFKDSI SSTEAINRLQ GVILYSSLGE GMRLEYAKSR
301: MGLWKRDKHP
001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.