Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036196_P001 | Maize | extracellular, nucleus | 78.33 | 77.56 |
| Os06t0151200-01 | Rice | nucleus | 68.0 | 68.0 |
| TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 65.67 | 66.33 |
| TraesCS7A01G106400.1 | Wheat | nucleus | 64.67 | 65.32 |
| TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 62.0 | 62.63 |
| VIT_09s0002g02410.t01 | Wine grape | nucleus | 48.0 | 52.94 |
| PGSC0003DMT400006410 | Potato | nucleus | 45.67 | 49.28 |
| KRH47143 | Soybean | nucleus | 43.33 | 49.06 |
| Solyc03g121450.2.1 | Tomato | nucleus | 45.0 | 48.56 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 51.33 | 48.12 |
| KRH44168 | Soybean | nucleus | 43.33 | 46.93 |
| CDY23631 | Canola | nucleus | 42.0 | 46.67 |
| CDX97508 | Canola | nucleus | 39.67 | 44.4 |
| Bra027407.1-P | Field mustard | nucleus | 39.67 | 44.4 |
| HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 48.67 | 42.69 |
| AT3G13700.1 | Thale cress | nucleus | 40.33 | 40.88 |
| EER88849 | Sorghum | nucleus | 33.67 | 32.58 |
| EES14795 | Sorghum | plastid | 25.0 | 23.44 |
Protein Annotations
| EnsemblPlants:KXG19320 | EnsemblPlantsGene:SORBI_3010G040800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:KXG19320 | ProteinID:KXG19320.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0007F192C0 | UniProt:A0A194YH76 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr10:-:3180024..3188943
Molecular Weight (calculated)
32844.7 Da
IEP (calculated)
4.659
GRAVY (calculated)
-0.752
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSHRLPHA AAAAVDPYYV YAPHPDPQRQ GVLTLFVAGL PDDVKPREIH NLFSHRPAFD HCLLEYTGRA NQVVAFVTFF THEAALSAMT SLNGTIFDPE
101: TGYRLHIELA KSTSRRPRGG GEVYRVIDKR TNKTEGNADE NVGDEVDEEV WGGDEDGAND DNGDGESDEP SGTENENSSD KNELPADQSD QPRHKKQNGK
201: SLSNDGRDKS SNDIPPCSTL FIANLGDTCT KDELNEVLSK EPGFDVLKMR RRGGMPVAFA DFTDIESSTA AMNSLQGTVL ASSDSDGLHI EYARSKMRKS
101: TGYRLHIELA KSTSRRPRGG GEVYRVIDKR TNKTEGNADE NVGDEVDEEV WGGDEDGAND DNGDGESDEP SGTENENSSD KNELPADQSD QPRHKKQNGK
201: SLSNDGRDKS SNDIPPCSTL FIANLGDTCT KDELNEVLSK EPGFDVLKMR RRGGMPVAFA DFTDIESSTA AMNSLQGTVL ASSDSDGLHI EYARSKMRKS
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.