Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006410 | Potato | nucleus | 97.48 | 97.48 |
| VIT_09s0002g02410.t01 | Wine grape | nucleus | 64.03 | 65.44 |
| CDY23631 | Canola | nucleus | 60.79 | 62.59 |
| Bra027407.1-P | Field mustard | nucleus | 59.71 | 61.94 |
| CDX97508 | Canola | nucleus | 59.71 | 61.94 |
| KRH47143 | Soybean | nucleus | 58.27 | 61.13 |
| KRH44168 | Soybean | nucleus | 58.99 | 59.21 |
| AT3G13700.1 | Thale cress | nucleus | 57.55 | 54.05 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 58.99 | 51.25 |
| KXG19320 | Sorghum | nucleus | 48.56 | 45.0 |
| Os06t0151200-01 | Rice | nucleus | 47.48 | 44.0 |
| Zm00001d036196_P001 | Maize | extracellular, nucleus | 47.48 | 43.56 |
| TraesCS7A01G106400.1 | Wheat | nucleus | 45.32 | 42.42 |
| TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 45.32 | 42.42 |
| TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 41.73 | 39.06 |
| Solyc02g093120.2.1 | Tomato | nucleus | 24.1 | 35.26 |
| HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 31.65 | 25.73 |
| Solyc03g123840.2.1 | Tomato | nucleus | 27.34 | 23.75 |
Protein Annotations
| EnsemblPlants:Solyc03g121450.2.1 | EnsemblPlantsGene:Solyc03g121450.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002767305 | UniProt:K4BMU4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3:-:69557549..69562466
Molecular Weight (calculated)
30694.5 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.827
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHLPAYDPY YVPQPVYAYK NEQNDIKTLF VSGLPDDVKA REIHNLFRRR HGFESCQLKY TGRGNQVVAF ATFIDHPSAM AAMHALNGVK FDPQTGSTLH
101: IEPARSNSRR IQIPGRGPYV VIDNRNKFNE DAEGGTSSNE GDNDSDDASE PENPDSGTKD DSSEEKREEK VVEPDHALAP KSEQNEKTTD GAQPCSTLFI
201: ANLGPNCTED ELKQVVSQYS GFNTLKVRAR GGMPVAFADF EGVEQATKAL NELQGSTLPS SDRGGMHIEY ARSKMRKP
101: IEPARSNSRR IQIPGRGPYV VIDNRNKFNE DAEGGTSSNE GDNDSDDASE PENPDSGTKD DSSEEKREEK VVEPDHALAP KSEQNEKTTD GAQPCSTLFI
201: ANLGPNCTED ELKQVVSQYS GFNTLKVRAR GGMPVAFADF EGVEQATKAL NELQGSTLPS SDRGGMHIEY ARSKMRKP
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.