Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97508 | Canola | nucleus | 100.0 | 100.0 |
| AT3G13700.1 | Thale cress | nucleus | 73.88 | 66.89 |
| PGSC0003DMT400006410 | Potato | nucleus | 62.31 | 60.07 |
| Solyc03g121450.2.1 | Tomato | nucleus | 61.94 | 59.71 |
| KRH44168 | Soybean | nucleus | 59.7 | 57.76 |
| VIT_09s0002g02410.t01 | Wine grape | nucleus | 57.84 | 56.99 |
| KRH47143 | Soybean | nucleus | 56.34 | 56.98 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 52.24 | 43.75 |
| TraesCS7A01G106400.1 | Wheat | nucleus | 45.9 | 41.41 |
| TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 45.52 | 41.08 |
| Zm00001d036196_P001 | Maize | extracellular, nucleus | 45.15 | 39.93 |
| KXG19320 | Sorghum | nucleus | 44.4 | 39.67 |
| Os06t0151200-01 | Rice | nucleus | 44.03 | 39.33 |
| TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 42.54 | 38.38 |
| Bra023895.1-P | Field mustard | nucleus | 30.97 | 27.12 |
| HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 33.96 | 26.61 |
Protein Annotations
| EnsemblPlants:Bra027407.1 | EnsemblPlants:Bra027407.1-P | EnsemblPlantsGene:Bra027407 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002547F93 | UniProt:M4EF45 | MapMan:35.2 | : | : | : |
Description
AT3G13700 (E=2e-126) | RNA-binding protein, putative
Coordinates
chrA05:+:20746893..20748457
Molecular Weight (calculated)
29195.7 Da
IEP (calculated)
4.932
GRAVY (calculated)
-0.744
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAYHQPYYV YNPHPLPQLA DEPGAINTLF VSGLPDDVKA REIHNLFRRR PGFESSQLKY TGRGDQVVAF ATFSSHGFAM AAMNELNGVK FDPQTGSTLH
101: IEVARSNSRR KERPGSGPYV VIDNRNKEPS KSQDGQSGEG ESDPDEAEEP GNSNSPKGND STKSEVDSDQ DSKAPPTSGH LEKAFEGGSG ARPCSTLFIA
201: NLGPNCTEDE LKQLLSRYPG FNILKIRARG GMPVAFADFE EIEQATYVMN DLQGNLLSSS DRGGMHIE
101: IEVARSNSRR KERPGSGPYV VIDNRNKEPS KSQDGQSGEG ESDPDEAEEP GNSNSPKGND STKSEVDSDQ DSKAPPTSGH LEKAFEGGSG ARPCSTLFIA
201: NLGPNCTEDE LKQLLSRYPG FNILKIRARG GMPVAFADFE EIEQATYVMN DLQGNLLSSS DRGGMHIE
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.