Factsheet for Bra023895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013997.1-P
Bra014000.1-P
Bra022208.1-P
Bra023825.1-P
Bra037056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	Bra022208.1-P	AT3G17310.1	21798944
AT3G21215.1	Bra023825.1-P	AT3G22440.1	21798944
AT3G21215.1	Bra013997.1-P	AT4G13850.1	21798944
AT3G21215.1	Bra014000.1-P	AT4G13850.1	21798944
AT3G21215.1	Bra037056.1-P	AT4G13850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37307	Canola	nucleus	68.95	99.53
AT3G21215.1	Thale cress	nucleus	88.24	79.65
VIT_09s0018g01880.t01	Wine grape	nucleus	77.45	79.26
Solyc03g123840.2.1	Tomato	nucleus	72.88	69.69
KRH44644	Soybean	nucleus	71.57	69.09
PGSC0003DMT400023680	Potato	plastid	72.55	66.87
GSMUA_Achr2P05000_001	Banana	cytosol	65.03	65.89
Zm00001d049346_P001	Maize	plastid	67.65	64.29
GSMUA_Achr9P19610_001	Banana	cytosol	64.05	64.05
TraesCS7A01G287800.1	Wheat	nucleus, plastid	66.34	63.64
TraesCS7D01G290200.1	Wheat	nucleus, plastid	66.01	63.32
TraesCS7B01G182400.1	Wheat	nucleus, plastid	65.69	63.01
EES14795	Sorghum	plastid	65.69	62.81
KRH47009	Soybean	nucleus	71.57	62.57
HORVU7Hr1G067800.6	Barley	plastid	65.69	58.43
Bra027407.1-P	Field mustard	nucleus	27.12	30.97

Protein Annotations

EnsemblPlants:Bra023895.1	EnsemblPlants:Bra023895.1-P	EnsemblPlantsGene:Bra023895	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254470B	UniProt:M4E541	MapMan:35.2	:

Description

AT3G21215 (E=8e-108) | RNA-binding protein, putative

Coordinates

chrA01:+:20891747..20893753

Molecular Weight (calculated)

33370.5 Da

IEP (calculated)

6.965

GRAVY (calculated)

-0.435

Length

306 amino acids

Sequence
(BLAST)

001: MAGAGIHPYH QQWPPTGAPP PPSAVSSAPP PHPPPVHHHD PPPPGLADRS PYDELRTIFI AGLPDDVKER ELLNLLRWLP GYEASQVNFK GEKPMGFALF
101: STAQFALAAR DALQHLVFDA ESKSVLHAEM AKKNLFVKRG IVGDSNAYDQ SKRLRTGGDC THSVYSPSPF HPPPPQVWGP PHGYLSPAAP PYDPYGGYHA
201: PPVPMPPSAP IAAPSSYVPV QNVKDNPPCN TLFIGNLGEN IHEEELRSLL SAQPGFKQMK VLRQERHTVC FIEFEDVNSA TNVHHNLQGA VIPSSGSVGM
301: RIQYPF

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.