Factsheet for Zm00001d049346_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007835_P002
Zm00001d010928_P001
Zm00001d018911_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21215.1	Zm00001d010928_P001	AT3G17310.1	21798944
AT3G21215.1	Zm00001d007835_P002	AT3G22440.1	21798944
AT3G21215.1	Zm00001d018911_P001	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14795	Sorghum	plastid	88.82	89.38
TraesCS7D01G290200.1	Wheat	nucleus, plastid	74.22	74.92
TraesCS7A01G287800.1	Wheat	nucleus, plastid	74.22	74.92
TraesCS7B01G182400.1	Wheat	nucleus, plastid	72.98	73.67
CDY37307	Canola	nucleus	46.27	70.28
VIT_09s0018g01880.t01	Wine grape	nucleus	65.22	70.23
GSMUA_Achr2P05000_001	Banana	cytosol	65.22	69.54
HORVU7Hr1G067800.6	Barley	plastid	74.22	69.48
Bra023895.1-P	Field mustard	nucleus	64.29	67.65
GSMUA_Achr9P19610_001	Banana	cytosol	63.04	66.34
Solyc03g123840.2.1	Tomato	nucleus	64.29	64.69
KRH44644	Soybean	nucleus	63.35	64.35
AT3G21215.1	Thale cress	nucleus	65.53	62.24
CDY27533	Canola	nucleus	64.91	60.93
PGSC0003DMT400023680	Potato	plastid	62.42	60.54
KRH47009	Soybean	nucleus	63.66	58.57
CDY06428	Canola	nucleus	41.93	43.69
Zm00001d014533_P001	Maize	extracellular	27.33	28.21
Zm00001d036196_P001	Maize	extracellular, nucleus	25.47	27.06

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A1D6PTV9	ProteinID:AQK50066.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0008433C5F	EnsemblPlantsGene:Zm00001d049346	EnsemblPlants:Zm00001d049346_P001	EnsemblPlants:Zm00001d049346_T001	SEG:seg

Description

Cell wall integrity protein scw1

Coordinates

chr4:-:27240538..27245048

Molecular Weight (calculated)

34753.8 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.130

Length

322 amino acids

Sequence
(BLAST)

001: MAGAGIHPFQ QWPPTAAAPP PPGAAASVAV PPPPPVPGAP GTVGPDEVRT IFITGLPADV KERELHNLLR WLPGFEASQI NFKGDQPMGF ALFSTAHQAI
101: AAKTALQDMV FDAETKVALH TEMAKKNLFV KRCVGIDANA VDQSKRLRTG GDYTHSPYAP PFHPPPPAVS MWGTPGYITA PPPYNPYAAY PVPPVAMTSP
201: APVTGPTAYA PVQNTKDNPP CNTLFIGNLG DTVVEEELRS LFSVQPGFKQ MKVLRQDRNT VCFIEFEDVN AATSVHQTLQ GAVIPSSGRG GMRIQYPLFI
301: RKKWILTLHQ TYISIFNLIL SS

Best Arabidopsis Sequence Match ( AT3G21215.3 )
(BLAST)

001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII

Arabidopsis Description

AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.