Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P05000_001 | Banana | cytosol | 82.03 | 83.11 |
| VIT_09s0018g01880.t01 | Wine grape | nucleus | 68.3 | 69.9 |
| CDY37307 | Canola | nucleus | 47.06 | 67.92 |
| KRH44644 | Soybean | nucleus | 68.3 | 65.93 |
| Bra023895.1-P | Field mustard | nucleus | 64.05 | 64.05 |
| TraesCS7D01G290200.1 | Wheat | nucleus, plastid | 66.34 | 63.64 |
| TraesCS7A01G287800.1 | Wheat | nucleus, plastid | 66.34 | 63.64 |
| Zm00001d049346_P001 | Maize | plastid | 66.34 | 63.04 |
| TraesCS7B01G182400.1 | Wheat | nucleus, plastid | 65.69 | 63.01 |
| EES14795 | Sorghum | plastid | 65.03 | 62.19 |
| Solyc03g123840.2.1 | Tomato | nucleus | 63.4 | 60.62 |
| KRH47009 | Soybean | nucleus | 68.95 | 60.29 |
| AT3G21215.1 | Thale cress | nucleus | 66.34 | 59.88 |
| HORVU7Hr1G067800.6 | Barley | plastid | 66.01 | 58.72 |
| CDY27533 | Canola | nucleus | 65.03 | 58.02 |
| PGSC0003DMT400023680 | Potato | plastid | 62.75 | 57.83 |
| CDY06428 | Canola | nucleus | 44.12 | 43.69 |
| GSMUA_Achr10P... | Banana | nucleus | 13.07 | 31.75 |
| GSMUA_Achr9P11330_001 | Banana | nucleus | 28.1 | 26.96 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 25.49 | 24.38 |
| GSMUA_Achr10P... | Banana | nucleus | 19.61 | 23.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P19610_001 | EnsemblPlants:GSMUA_Achr9T19610_001 | EnsemblPlantsGene:GSMUA_Achr9G19610_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45381 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00029520EB | UniProt:M0U1R8 | MapMan:35.2 | : | : |
Description
proline rich protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G19610_001]
Coordinates
chr9:-:21740198..21745493
Molecular Weight (calculated)
33812.3 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.327
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAGMHPYH QQWAPPPAPA VAPPMPVEVP NRPPGDEIRT IFITGLPVDV KERELHNLLR WFPGFEASQI NFKAEQPMGF ALFSTAQHAV AAKDALQDLV
101: FDAETKSSLH TEMAKKNLFV KRGVVSESSS LDHSKRLRTG GDYTHAGYAA PAFHQAPVWG TPGYVAPHPP APYDPYGGYP LPQVAMPTPS PMPAPSRYSP
201: VQKTKDNPPC NTLFIGNLGE NVIEEEVRGL FSVQPGFKQM KILRQERNTV CFIEFEDLNS ATNVHQNLQG AVLTSSSRGG IRIQYPFLLQ YYFSESLLLS
301: CLHEFS
101: FDAETKSSLH TEMAKKNLFV KRGVVSESSS LDHSKRLRTG GDYTHAGYAA PAFHQAPVWG TPGYVAPHPP APYDPYGGYP LPQVAMPTPS PMPAPSRYSP
201: VQKTKDNPPC NTLFIGNLGE NVIEEEVRGL FSVQPGFKQM KILRQERNTV CFIEFEDLNS ATNVHQNLQG AVLTSSSRGG IRIQYPFLLQ YYFSESLLLS
301: CLHEFS
001: MAGAGIHPYH QQWPPAGAPP PPAAVSSAAP PHPPPIHHHP PPPPVLVDNH NRPPYDELRT IFIAGLPDDV KERELLNLLR WLPGYEASQV NFKGEKPMGF
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII
101: ALFSTAQFAM AAKDTLQHMV FDAESKSVIH TEMAKKNLFV KRGIVGDSNA YDQSKRLRTG GDCTHSVYSP SPFHPPPPPV WGPPHGYMAP APPPYDPYAG
201: YHAPPVPMPT PPPIAAPSSY VPVQNIKDNP PCNTLFIGNL GENINEEELR SLLSAQPGFK QMKILRQERH TVCFIEFEDV NSATNVHHNL QGAVIPSSGS
301: IGMRIQYPYI LLLFLII
Arabidopsis Description
AT3G21215 protein [Source:UniProtKB/TrEMBL;Acc:Q9ASW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.