Factsheet for GSMUA_Achr2P16620_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02410.t01	Wine grape	nucleus	52.19	61.4
Solyc03g121450.2.1	Tomato	nucleus	51.25	58.99
PGSC0003DMT400006410	Potato	nucleus	50.94	58.63
KRH47143	Soybean	nucleus	45.62	55.09
KRH44168	Soybean	nucleus	47.5	54.87
CDY23631	Canola	nucleus	44.69	52.96
Bra027407.1-P	Field mustard	nucleus	43.75	52.24
CDX97508	Canola	nucleus	43.75	52.24
Os06t0151200-01	Rice	nucleus	48.75	52.0
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	47.81	51.52
KXG19320	Sorghum	nucleus	48.12	51.33
TraesCS7A01G106400.1	Wheat	nucleus	47.19	50.84
Zm00001d036196_P001	Maize	extracellular, nucleus	48.12	50.83
AT3G13700.1	Thale cress	nucleus	45.62	49.32
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	44.69	48.15
GSMUA_Achr10P...	Banana	nucleus	15.31	38.89
GSMUA_Achr9P11330_001	Banana	nucleus	35.31	35.42
HORVU7Hr1G022410.5	Barley	cytosol, nucleus, plastid	35.94	33.63
GSMUA_Achr10P...	Banana	nucleus	23.75	29.34
GSMUA_Achr2P05000_001	Banana	cytosol	24.69	26.16
GSMUA_Achr9P19610_001	Banana	cytosol	24.38	25.49

Protein Annotations

EnsemblPlants:GSMUA_Achr2P16620_001	EnsemblPlants:GSMUA_Achr2T16620_001	EnsemblPlantsGene:GSMUA_Achr2G16620_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000295F4B8	UniProt:M0S8K3	MapMan:35.2	:	:

Description

Putative RNA-binding protein with multiple splicing [Source:GMGC_GENE;Acc:GSMUA_Achr2G16620_001]

Coordinates

chr2:+:17420843..17426902

Molecular Weight (calculated)

34556.4 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.533

Length

320 amino acids

Sequence
(BLAST)

001: MKPSYASHAP PSNSSAAVAM HPPPPAAAGA VVEAPGFPQP YYLHPHSHHH HHQQPHPAHP PAPPVVYSKP EQQRIKTLFV SGLPDDVKPR EIHNLFRRRP
101: GFDSCQLEYT GRGDQVVAFA TFFNHQSAIA AMSSLDGVVF DPEIGATLHI ELARSNSRKR SRGVGAYTVI DKRVKVTNDD QELFSDDGDG GSDEPSGTDN
201: DNPSNKDALA AVKSEGTIVI PDGADGTFND HTDIPPCSTL FIANLGPTCT EEELKQVLSK YSGFHMLKMR GRGGMPVAFA DFTDTESSTA AMNGLQGILL
301: ESSDRGGVHV EYARSKMRKS

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.