Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027407.1-P | Field mustard | nucleus | 66.89 | 73.88 |
| CDX97508 | Canola | nucleus | 66.89 | 73.88 |
| CDY23631 | Canola | nucleus | 62.84 | 68.89 |
| KRH47143 | Soybean | nucleus | 51.69 | 57.74 |
| Solyc03g121450.2.1 | Tomato | nucleus | 54.05 | 57.55 |
| PGSC0003DMT400006410 | Potato | nucleus | 53.72 | 57.19 |
| KRH44168 | Soybean | nucleus | 53.38 | 57.04 |
| VIT_09s0002g02410.t01 | Wine grape | nucleus | 51.35 | 55.88 |
| GSMUA_Achr2P16620_001 | Banana | plastid | 49.32 | 45.62 |
| Zm00001d036196_P001 | Maize | extracellular, nucleus | 42.91 | 41.91 |
| TraesCS7A01G106400.1 | Wheat | nucleus | 40.88 | 40.74 |
| KXG19320 | Sorghum | nucleus | 40.88 | 40.33 |
| Os06t0151200-01 | Rice | nucleus | 40.2 | 39.67 |
| TraesCS7D01G100500.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 39.53 | 39.39 |
| TraesCS7B01G005000.1 | Wheat | mitochondrion, nucleus | 37.16 | 37.04 |
| AT2G42240.4 | Thale cress | nucleus | 29.05 | 28.48 |
| HORVU7Hr1G022410.5 | Barley | cytosol, nucleus, plastid | 30.07 | 26.02 |
| AT3G21215.1 | Thale cress | nucleus | 26.35 | 23.01 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:820579 | ProteinID:AEE75400.1 | ArrayExpress:AT3G13700 | EnsemblPlantsGene:AT3G13700 |
| RefSeq:AT3G13700 | TAIR:AT3G13700 | RefSeq:AT3G13700-TAIR-G | EnsemblPlants:AT3G13700.1 | TAIR:AT3G13700.1 | UniProt:B3H4P0 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_187983.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000293 | PFscan:PS50102 |
| PANTHER:PTHR45381 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00001633B7 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
Coordinates
chr3:-:4491008..4493737
Molecular Weight (calculated)
32881.3 Da
IEP (calculated)
6.043
GRAVY (calculated)
-0.657
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVCKN LQFLFFFIPI FRKAVVAFAT
101: FTSHRFALAA MNELNGVKFD PQTGSNLHIE LARSNSRRKE RPGSGPYVVI DNRNKEISKS QDDQSDEGDS DPDEVQEPGN SDSPKENDTT KSEADSEPDS
201: KAPSANGHLE KASEGGSGAR ACSTLFIANL GPNCTEDELK QLLSRYPGFH ILKIRARGGM PVAFADFEEI EQATDAMNHL QGNLLSSSDR GGMHIE
101: FTSHRFALAA MNELNGVKFD PQTGSNLHIE LARSNSRRKE RPGSGPYVVI DNRNKEISKS QDDQSDEGDS DPDEVQEPGN SDSPKENDTT KSEADSEPDS
201: KAPSANGHLE KASEGGSGAR ACSTLFIANL GPNCTEDELK QLLSRYPGFH ILKIRARGGM PVAFADFEEI EQATDAMNHL QGNLLSSSDR GGMHIE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.