Factsheet for PGSC0003DMT400006410

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121450.2.1	Tomato	nucleus	97.48	97.48
VIT_09s0002g02410.t01	Wine grape	nucleus	64.39	65.81
CDY23631	Canola	nucleus	60.79	62.59
Bra027407.1-P	Field mustard	nucleus	60.07	62.31
CDX97508	Canola	nucleus	60.07	62.31
KRH47143	Soybean	nucleus	58.63	61.51
KRH44168	Soybean	nucleus	59.35	59.57
AT3G13700.1	Thale cress	nucleus	57.19	53.72
GSMUA_Achr2P16620_001	Banana	plastid	58.63	50.94
KXG19320	Sorghum	nucleus	49.28	45.67
Os06t0151200-01	Rice	nucleus	48.2	44.67
Zm00001d036196_P001	Maize	extracellular, nucleus	48.2	44.22
TraesCS7A01G106400.1	Wheat	nucleus	46.04	43.1
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	46.04	43.1
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	42.45	39.73
PGSC0003DMT400010226	Potato	nucleus	35.97	31.65
HORVU7Hr1G022410.5	Barley	cytosol, nucleus, plastid	32.01	26.02
PGSC0003DMT400023680	Potato	plastid	28.78	24.1

Protein Annotations

EntrezGene:102592531	Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZRA9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400002505	PGSC:PGSC0003DMG400002505	EnsemblPlants:PGSC0003DMT400006410	PFscan:PS50102	PANTHER:PTHR45381	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295EF66	RefSeq:XP_006342997.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002505]

Coordinates

chr3:-:60740794..60746707

Molecular Weight (calculated)

30652.5 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.763

Length

278 amino acids

Sequence
(BLAST)

001: MAHLPAYDPY YVTQPVYAYN NEQNDIKTLF VSGLPDDVKA REIHNLFRRR PGFESCQLKY TGRGNQVVAF ATFIDHPSAM AAMHALNGVK FDPQTGSTLH
101: IEPARSNSRR IQIPGRGPYV VIDNRNKFNE DAEGGTSSNE GDIDSDDASE PENPDSGTKD DSSEEKREEK VVEPDHALAP KSEQNEKTTD GAQPCSTLFI
201: ANLGPNCTED ELKQVISLYP GFNTLKVRAR GGMPVAFADF EGVEQATKAL NELQGSTLPS SDRGGMHIEY ARSKMRKP

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.