CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44168	Soybean	nucleus	79.25	75.81
VIT_09s0002g02410.t01	Wine grape	nucleus	64.53	62.87
PGSC0003DMT400006410	Potato	nucleus	61.51	58.63
Solyc03g121450.2.1	Tomato	nucleus	61.13	58.27
CDY23631	Canola	nucleus	57.74	56.67
Bra027407.1-P	Field mustard	nucleus	56.98	56.34
CDX97508	Canola	nucleus	56.98	56.34
AT3G13700.1	Thale cress	nucleus	57.74	51.69
GSMUA_Achr2P16620_001	Banana	plastid	55.09	45.62
KXG19320	Sorghum	nucleus	49.06	43.33
Zm00001d036196_P001	Maize	extracellular, nucleus	49.06	42.9
TraesCS7A01G106400.1	Wheat	nucleus	47.92	42.76
Os06t0151200-01	Rice	nucleus	47.92	42.33
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	46.79	41.75
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	46.04	41.08
KRH77037	Soybean	nucleus	37.74	30.03
KRH28438	Soybean	nucleus	38.11	29.88
KRH44644	Soybean	nucleus	30.19	25.24
HORVU7Hr1G022410.5	Barley	cytosol, nucleus, plastid	31.32	24.27
KRH47009	Soybean	nucleus	30.94	23.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02004137	EnsemblPlantsGene:GLYMA_07G011100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	UniProt:I1KGD9	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH47143
ProteinID:KRH47143	ProteinID:KRH47143.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45381
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002338961	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:843406..847022

Molecular Weight (calculated)

28984.8 Da

IEP (calculated)

5.374

GRAVY (calculated)

-0.604

Length

265 amino acids

Sequence
(BLAST)

001: MAHPPLDPYY LYQQQDERSN INTLFVSGLP DDVKAREIHN LFRRRPGFDS CQLKYTGRAN QVVAFATFFN HQSAMAALHA LNGVKFDPQT GSVLHIELAR
101: SNSRRKRKPG GEAYVVIDKR STGEPDLQGS SSDDGDSDPD EPSDSGDNQG DIAIMTSDET AVGSDNAVSV EQHGKGSAGG LCSTLFIANL GPNCTEDELK
201: QAFSVYTGFN MVKMRSRGGM PVAFVDFEET DQAAKVVEEL QGSLLPSSDR GGMHIEYARS KMRKR

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.