CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28438	Soybean	nucleus	82.58	81.36
Solyc02g093120.2.1	Tomato	nucleus	34.53	60.53
VIT_07s0031g00180.t01	Wine grape	nucleus, plastid	58.86	58.86
GSMUA_Achr10P...	Banana	nucleus	21.62	57.14
PGSC0003DMT400010226	Potato	nucleus	53.45	56.33
GSMUA_Achr9P11330_001	Banana	nucleus	48.05	50.16
EER88849	Sorghum	nucleus	44.74	48.06
Zm00001d014533_P001	Maize	extracellular	44.74	47.76
AT2G42240.4	Thale cress	nucleus	42.94	47.35
TraesCS7A01G443800.1	Wheat	nucleus	44.14	46.37
TraesCS7D01G432900.1	Wheat	nucleus	43.84	46.06
TraesCS7B01G342500.1	Wheat	nucleus	42.94	45.11
CDY22555	Canola	nucleus	44.74	45.02
GSMUA_Achr10P...	Banana	nucleus	33.33	42.86
HORVU7Hr1G100830.1	Barley	plastid	45.35	40.59
Os06t0687500-01	Rice	plastid	24.92	37.9
KRH47143	Soybean	nucleus	30.03	37.74
KRH44168	Soybean	nucleus	31.23	37.55
KRH44644	Soybean	nucleus	25.53	26.81
KRH47009	Soybean	nucleus	26.13	24.86

Protein Annotations

EntrezGene:100799471	Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02000653	EnsemblPlantsGene:GLYMA_01G188700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1J994	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH77037	ProteinID:KRH77037	ProteinID:KRH77037.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45381	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296D944
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:52395629..52399175

Molecular Weight (calculated)

36137.7 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.372

Length

333 amino acids

Sequence
(BLAST)

001: MAAYYSQPQP SDLLSYQYYQ PPPPPLPPLM AVVPPPPGAV VQPAHHVHPS YMAQHQAVFA SYGVSQSSTH EVRTLFVAGL PEDVKPREIY NLFREFPDYE
101: SSHLRSPSNS SQPFAFAVFA SQQSAIMAKH ALNGLVFDLE KGSILYIDLA KSNSRSKRTR IDDERAGADK KARGLTPSWA TPDSAGVGSI HMPGMGNPAF
201: NTNMFGYPSA QSLGNADGST MSGGLFANLK KSSTPYVPQN STPCATLFVA NLGSSCNEQE LIQVFSRYPG FLKLKMQSTY GAPVAFVDFQ DVGSSTDALN
301: SLQGTILHSS QSGEGMRVEY AKSRMGMRKK PNR

Best Arabidopsis Sequence Match ( AT2G42240.1 )
(BLAST)

001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY ARSRMGMRKK IN

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.