Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22555 | Canola | nucleus | 59.93 | 54.68 |
| Solyc02g093120.2.1 | Tomato | nucleus | 32.45 | 51.58 |
| PGSC0003DMT400010226 | Potato | nucleus | 50.66 | 48.42 |
| GSMUA_Achr10P... | Banana | nucleus | 19.87 | 47.62 |
| VIT_07s0031g00180.t01 | Wine grape | nucleus, plastid | 51.66 | 46.85 |
| GSMUA_Achr9P11330_001 | Banana | nucleus | 45.7 | 43.26 |
| KRH77037 | Soybean | nucleus | 47.35 | 42.94 |
| EER88849 | Sorghum | nucleus | 43.38 | 42.26 |
| KRH28438 | Soybean | nucleus | 47.02 | 42.01 |
| Zm00001d014533_P001 | Maize | extracellular | 42.38 | 41.03 |
| TraesCS7D01G432900.1 | Wheat | nucleus | 41.72 | 39.75 |
| TraesCS7A01G443800.1 | Wheat | nucleus | 41.39 | 39.43 |
| TraesCS7B01G342500.1 | Wheat | nucleus | 41.39 | 39.43 |
| Os06t0687500-01 | Rice | plastid | 28.48 | 39.27 |
| GSMUA_Achr10P... | Banana | nucleus | 32.45 | 37.84 |
| HORVU7Hr1G100830.1 | Barley | plastid | 41.72 | 33.87 |
| AT3G13700.1 | Thale cress | nucleus | 28.48 | 29.05 |
| AT3G21215.1 | Thale cress | nucleus | 29.47 | 26.25 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:818824 | UniProt:A0A178VUC9 | EMBL:AK228665 | ProteinID:ANM62731.1 |
| ArrayExpress:AT2G42240 | EnsemblPlantsGene:AT2G42240 | RefSeq:AT2G42240 | TAIR:AT2G42240 | RefSeq:AT2G42240-TAIR-G | EnsemblPlants:AT2G42240.4 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_001078040.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP10000.1 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45381 | UniProt:Q0WQM7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0000DB52D5 | SEG:seg | : | : | : | : |
Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM7]
Coordinates
chr2:+:17596717..17598911
Molecular Weight (calculated)
33067.5 Da
IEP (calculated)
7.929
GRAVY (calculated)
-0.140
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLEAYYSH YNLPAMVPPP PPGVSPIPIT SAHSVYLPTH VSIGARDEVR TLFVAGLPED VKPREIYNLF REFPGYETSH LRSSDGAKPF AFAVFSDLQS
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY PSLLPILFLC FLLVGLHRFP
301: KN
101: AVAVMHALNG MVFDLEKHST LHIDLAKSNP KSKRSRTDDG WESLKKLKSW NTTTESGFGS FQTPGMSSSA YNTIGYSPAQ SQGIANVAGR APTSRKPSKA
201: ADPCPTLFIA NMGPNCTEAE LIQVFSRCRG FLKLKIQGTY GTPVAFVDFQ DVSCSSEALH TLQGTVLYSS LTGEVLRLQY PSLLPILFLC FLLVGLHRFP
301: KN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.