Factsheet for HORVU7Hr1G022410.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G100500.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	60.82	70.03
TraesCS7A01G106400.1	Wheat	nucleus	56.14	64.65
TraesCS7B01G005000.1	Wheat	mitochondrion, nucleus	53.8	61.95
KXG19320	Sorghum	nucleus	42.69	48.67
Os06t0151200-01	Rice	nucleus	41.81	47.67
Zm00001d036196_P001	Maize	extracellular, nucleus	39.47	44.55
VIT_09s0002g02410.t01	Wine grape	nucleus	28.66	36.03
GSMUA_Achr2P16620_001	Banana	plastid	33.63	35.94
CDX97508	Canola	nucleus	26.61	33.96
Bra027407.1-P	Field mustard	nucleus	26.61	33.96
PGSC0003DMT400006410	Potato	nucleus	26.02	32.01
CDY23631	Canola	nucleus	25.15	31.85
Solyc03g121450.2.1	Tomato	nucleus	25.73	31.65
KRH47143	Soybean	nucleus	24.27	31.32
KRH44168	Soybean	nucleus	25.15	31.05
AT3G13700.1	Thale cress	nucleus	26.02	30.07
HORVU7Hr1G100830.1	Barley	plastid	24.27	22.31
HORVU7Hr1G067800.6	Barley	plastid	19.3	19.19

Protein Annotations

EnsemblPlants:HORVU7Hr1G022410.5	EnsemblPlantsGene:HORVU7Hr1G022410	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45381	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000B47D1E0	UniProt:A0A287VNR8	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:32775999..32780166

Molecular Weight (calculated)

37018.3 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.779

Length

342 amino acids

Sequence
(BLAST)

001: RKEKHTPSGA PLPSAAPRDR RDEPLPPPPP PAARRAAVGG PLLPPVRAAA APAPGPAAGR RHALRRRPPR RRQAPRDPQP LLPPPRLRPL PPRVHRPRQP
101: EAVAFVSFFT HHAALSAMAS LNGSVFDPDN GDCLHIELAK SNSRKRHGGG GEVYRVIDKR VRTEENSDND NNRDEGDDDV SGNDDGQGGS DGPSDEENDN
201: SSDKNELLTD QSGEPGTKQQ KGRSSNDQPD KIPPCSTLFL SNLGQTCTEK ELEELLSKQP GFHVLKMRRR GGLPAAFADF TDIESSTAAM ENFKGTMLSS
301: SDSDGLQIEY PLFLAVQDIA GSFLDAIVLI ISRACRLVGW CS

Best Arabidopsis Sequence Match ( AT3G13700.2 )
(BLAST)

001: MAYHQPYDPF YVYQLHSHPH HLPPQLPLLA DEPGAINTLF VSGLPNDVKA REIHNLFRRR HGFESCQLKY TGRGDQVVAF ATFTSHRFAL AAMNELNGVK
101: FDPQTGSNLH IELARSNSRR KERPGSGPYV VIDNRNKEIS KSQDDQSDEG DSDPDEVQEP GNSDSPKEND TTKSEADSEP DSKAPSANGH LEKASEGGSG
201: ARACSTLFIA NLGPNCTEDE LKQLLSRYPG FHILKIRARG GMPVAFADFE EIEQATDAMN HLQGNLLSSS DRGGMHIEYA RSKMRKQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:B3H4P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.