Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 40.49 | 84.62 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 83.64 | 83.81 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 43.97 | 70.03 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 61.15 | 57.28 |
| KRG91301 | Soybean | cytosol | 60.74 | 56.68 |
| Os07t0173200-02 | Rice | cytosol | 61.35 | 56.18 |
| KRH35520 | Soybean | cytosol | 60.12 | 55.47 |
| Solyc09g076050.2.1 | Tomato | nucleus | 55.62 | 52.92 |
| PGSC0003DMT400077344 | Potato | nucleus | 55.62 | 52.92 |
| Os03t0794900-01 | Rice | nucleus | 59.1 | 52.55 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 54.19 | 50.77 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 53.99 | 50.29 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 54.19 | 49.81 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 54.19 | 49.63 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 56.03 | 49.46 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 56.03 | 49.37 |
| Zm00001d007835_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 58.28 | 49.31 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 55.42 | 49.09 |
| AT4G14900.1 | Thale cress | nucleus | 53.37 | 49.06 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 55.62 | 49.01 |
| Zm00001d018911_P001 | Maize | cytosol | 59.51 | 47.94 |
| KXG34492 | Sorghum | nucleus | 59.51 | 47.09 |
| CDY38318 | Canola | nucleus | 40.49 | 37.29 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 14.11 | 35.57 |
| GSMUA_Achr10P... | Banana | nucleus | 30.67 | 28.9 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 30.67 | 27.78 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 30.47 | 27.59 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 22.09 | 27.27 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 30.47 | 25.34 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 30.27 | 24.34 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 23.72 | 23.92 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P12700_001 | EnsemblPlants:GSMUA_Achr2T12700_001 | EnsemblPlantsGene:GSMUA_Achr2G12700_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF2 | PFAM:PF07899 | SEG:seg | UniParc:UPI00029574FC | UniProt:M0S7G1 |
| MapMan:35.1 | : | : | : | : | : |
Description
frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G12700_001]
Coordinates
chr2:-:15080317..15083775
Molecular Weight (calculated)
53571.8 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.392
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEAAAAIP SSLVQESFAE LEKQRELITC CTLLWKELSD HFSTLERGLE IKSEALRSKR QSLDASTRRT LGSLRRRELS IDAAVDLALS KLDERRVAAR
101: KDVELLRSEL PVALADCIDP SKFVMNAISG VFPVDKRLVK SPNDLGWACV LILESLVPVL ADPELGTARL LVTRTTRERA KEIAEEWKEG LEQHGGVENT
201: KPSDAHTFLQ LVVTFGIVEK DDKALYQRLV VSFSWRKQMP KLAISLGLED KMEDIIEELI SNGHQLDAIN FAYEAGLQDK FPPVPLLKSF LKDSKKATST
301: SDDRNNCGQT ANNTCRKEQS VIRAAIKCIQ EHKLEAEFPL EGLQKRLEQL EKAKVEKKRP SGGGPANKRT RASNGGPMPP AKAGRLTSNA CVSSFPAAPA
401: FVRSPSSHAT YPAAAPYPYD SPAGLGVYGS RSPPALRDSY GYPAEVGSAA LGASYPSPPM SYPVYGNYNN GLGGYNNALT PVYQQAYYR
101: KDVELLRSEL PVALADCIDP SKFVMNAISG VFPVDKRLVK SPNDLGWACV LILESLVPVL ADPELGTARL LVTRTTRERA KEIAEEWKEG LEQHGGVENT
201: KPSDAHTFLQ LVVTFGIVEK DDKALYQRLV VSFSWRKQMP KLAISLGLED KMEDIIEELI SNGHQLDAIN FAYEAGLQDK FPPVPLLKSF LKDSKKATST
301: SDDRNNCGQT ANNTCRKEQS VIRAAIKCIQ EHKLEAEFPL EGLQKRLEQL EKAKVEKKRP SGGGPANKRT RASNGGPMPP AKAGRLTSNA CVSSFPAAPA
401: FVRSPSSHAT YPAAAPYPYD SPAGLGVYGS RSPPALRDSY GYPAEVGSAA LGASYPSPPM SYPVYGNYNN GLGGYNNALT PVYQQAYYR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.