Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 47.78 | 46.53 |
| KRH60292 | Soybean | nucleus | 42.39 | 42.31 |
| KRH41582 | Soybean | nucleus | 42.39 | 42.31 |
| PGSC0003DMT400047832 | Potato | nucleus | 38.54 | 37.59 |
| Solyc11g071340.1.1 | Tomato | nucleus | 32.18 | 34.86 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 19.08 | 32.25 |
| Os01t0181000-00 | Rice | nucleus | 36.8 | 32.1 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 28.9 | 30.67 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 28.13 | 29.92 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 10.98 | 29.38 |
| KXG31679 | Sorghum | nucleus | 35.65 | 29.23 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 35.65 | 28.95 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 36.61 | 28.83 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 36.22 | 28.75 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 36.42 | 28.72 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 20.04 | 26.26 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 27.17 | 26.11 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 11.75 | 26.07 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 19.46 | 25.57 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 25.82 | 24.81 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 26.78 | 23.64 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 21.39 | 22.89 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 8.86 | 22.01 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 11.37 | 21.85 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 25.43 | 21.71 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 6.55 | 20.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P20980_001 | EnsemblPlants:GSMUA_Achr10T20980_001 | EnsemblPlantsGene:GSMUA_Achr10G20980_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF10 | PFAM:PF07899 | SEG:seg | UniParc:UPI000296F5E3 | UniProt:M0RK23 | MapMan:35.1 |
Description
frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G20980_001]
Coordinates
chr10:-:26794222..26797420
Molecular Weight (calculated)
56442.9 Da
IEP (calculated)
9.110
GRAVY (calculated)
-0.475
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEESPAD DRIQKFLDDL ESQHALLSNC TLLWKSLAEH FSSLRQALAL RSQSLDAHLQ ALESNTQKSL DSLALRDSSL PDRESAAAAA LHERRDAALA
101: EIQRSDAPSA DLRGLLRWYA RRMDSPGLWR FVVSRRKDLH ALRREVPDAV AASLDPARLV VDASEDFLNH HADDGGADRN WALGMLLRSL LISEGGKAPE
201: VAESMREKAA AVAEAWKEKF STKEEGGEGG GGTMGGSEAQ IFLQMVVAFG LRSRFEEGFL KKLVLEHASR KDMAKLAAAL GLGEQLADVI DELVKTGKEI
301: EAVYFVHESG LTERFPPDSL LKFYLQASRK KANSISKNGN NSIAAKEESS NMEINALKSI IKCVETCKLG SKFNVDGLKK RLAEMEKIKA ERKRSAVANR
401: PQGKRLRAAA GATPILRPAK AARGPNKPYA PYGQNPPAVS HIPATRHVYS YPGQGGFDGL ASAQYGAPRS QSPATVPQQY YAHDDMGALR AGMHHGGPSI
501: TYGGYDYTAP APTQQSRPH
101: EIQRSDAPSA DLRGLLRWYA RRMDSPGLWR FVVSRRKDLH ALRREVPDAV AASLDPARLV VDASEDFLNH HADDGGADRN WALGMLLRSL LISEGGKAPE
201: VAESMREKAA AVAEAWKEKF STKEEGGEGG GGTMGGSEAQ IFLQMVVAFG LRSRFEEGFL KKLVLEHASR KDMAKLAAAL GLGEQLADVI DELVKTGKEI
301: EAVYFVHESG LTERFPPDSL LKFYLQASRK KANSISKNGN NSIAAKEESS NMEINALKSI IKCVETCKLG SKFNVDGLKK RLAEMEKIKA ERKRSAVANR
401: PQGKRLRAAA GATPILRPAK AARGPNKPYA PYGQNPPAVS HIPATRHVYS YPGQGGFDGL ASAQYGAPRS QSPATVPQQY YAHDDMGALR AGMHHGGPSI
501: TYGGYDYTAP APTQQSRPH
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.