Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 53.09 | 48.36 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 82.99 | 29.81 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 78.87 | 28.33 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 84.02 | 27.72 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 32.99 | 27.35 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 71.65 | 25.79 |
| TraesCS5A01G168100.1 | Wheat | cytosol | 71.13 | 25.6 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 72.16 | 25.27 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 71.13 | 24.91 |
| EES02294 | Sorghum | nucleus | 66.49 | 24.07 |
| Os09t0248300-01 | Rice | cytosol | 67.01 | 23.99 |
| Zm00001d005107_P001 | Maize | cytosol | 65.46 | 23.78 |
| Zm00001d019890_P001 | Maize | nucleus | 64.95 | 23.6 |
| Os09t0248200-01 | Rice | cytosol | 65.98 | 23.49 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 65.46 | 22.56 |
| KRH66282 | Soybean | cytosol | 62.89 | 22.34 |
| KRH66280 | Soybean | cytosol | 61.34 | 21.88 |
| KRH07289 | Soybean | cytosol | 61.34 | 21.79 |
| PGSC0003DMT400071153 | Potato | nucleus | 58.25 | 20.73 |
| Solyc06g007640.2.1 | Tomato | nucleus | 57.22 | 20.71 |
| PGSC0003DMT400053214 | Potato | cytosol | 58.25 | 20.7 |
| Solyc06g082930.2.1 | Tomato | nucleus | 56.7 | 20.56 |
| CDY05684 | Canola | cytosol | 54.12 | 20.31 |
| Bra020704.1-P | Field mustard | cytosol | 53.09 | 19.85 |
| CDY00066 | Canola | cytosol | 54.12 | 19.66 |
| CDY48750 | Canola | cytosol | 53.09 | 19.54 |
| Bra037489.1-P | Field mustard | cytosol | 54.64 | 19.38 |
| Bra036176.1-P | Field mustard | cytosol | 51.55 | 19.23 |
| AT5G48385.1 | Thale cress | cytosol | 54.64 | 19.0 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 34.02 | 16.67 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 36.6 | 14.55 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 44.85 | 14.31 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 35.57 | 14.11 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 31.44 | 12.58 |
| GSMUA_Achr10P... | Banana | nucleus | 29.38 | 10.98 |
| Zm00001d019892_P001 | Maize | nucleus | 21.13 | 10.12 |
| CDX86307 | Canola | nucleus | 54.64 | 7.1 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 56.19 | 6.74 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 2.06 | 1.3 |
| Bra037488.1-P | Field mustard | cytosol | 0.52 | 0.11 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P05710_001 | EnsemblPlants:GSMUA_Achr2T05710_001 | EnsemblPlantsGene:GSMUA_Achr2G05710_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF12 | PFAM:PF07899 | SEG:seg | UniParc:UPI0002961BCC | UniProt:M0S5G2 | MapMan:35.1 |
Description
frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G05710_001]
Coordinates
chr2:-:10741036..10743811
Molecular Weight (calculated)
22194.7 Da
IEP (calculated)
9.887
GRAVY (calculated)
-0.618
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLIEVLLN SGRQIEAVNL AYAFKLTEQF PPVPLLKAYL KEAKKVSQVK AGSMSPGAQN EMNERELSAL KAVIKCIEEH KLEEQYPVDP LQKRILLLEK
101: AKADKRRAAE AAKPQTKRPR ANGSIYPRIN IMPDKSFHRS PFERYPYAYD RQYVYAAETH HPTPMGSAPY TIPRTHSTFY GNVHQVQYQT AYLY
101: AKADKRRAAE AAKPQTKRPR ANGSIYPRIN IMPDKSFHRS PFERYPYAYD RQYVYAAETH HPTPMGSAPY TIPRTHSTFY GNVHQVQYQT AYLY
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.