Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 49.01 | 51.65 |
| EER99638 | Sorghum | cytosol | 47.2 | 46.52 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 47.37 | 46.23 |
| Os07t0592300-01 | Rice | nucleus | 45.72 | 45.72 |
| KRH04492 | Soybean | nucleus | 41.45 | 45.57 |
| KRH58029 | Soybean | nucleus | 40.79 | 44.85 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 14.31 | 44.85 |
| Zm00001d006752_P003 | Maize | nucleus | 47.7 | 44.27 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 45.23 | 44.14 |
| Solyc04g008840.2.1 | Tomato | nucleus | 42.76 | 43.19 |
| PGSC0003DMT400065090 | Potato | nucleus | 43.09 | 43.09 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 44.41 | 42.79 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 37.83 | 42.59 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 44.08 | 42.54 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 43.91 | 42.25 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 37.5 | 42.22 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 37.66 | 38.95 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 21.38 | 32.83 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 11.68 | 30.34 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 24.34 | 30.27 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 14.64 | 28.99 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 23.19 | 28.89 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 22.7 | 28.45 |
| GSMUA_Achr10P... | Banana | nucleus | 21.71 | 25.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P16090_001 | EnsemblPlants:GSMUA_Achr5T16090_001 | EnsemblPlantsGene:GSMUA_Achr5G16090_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF12 | PFAM:PF07899 | SEG:seg | UniParc:UPI000295F38B | UniProt:M0SYY8 |
| MapMan:35.1 | : | : | : | : | : |
Description
frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G16090_001]
Coordinates
chr5:-:12858626..12860938
Molecular Weight (calculated)
67139.0 Da
IEP (calculated)
7.186
GRAVY (calculated)
-0.632
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTETVSSG IESAGMMLEQ LGKAFADLES HKESSLQSKI KWDEIKEHFQ SLERLLKDKL EEVKVKKKAF EEKQSEAQAL IAEKEAAVSA KEHASLARLQ
101: ELRDSAVSAI AEARHKYKVA SPEPIDVRGS KEKKVSTSPN DINAPNPASE EKNPDNASCE VRPRLKQLCQ QMDAKGLLKF ILEKKRNLGS LREELSLALK
201: YATEPARLVL ESLEGFYPLD QSNSPGNEDN TLQGLRRSCL LVMESAAPLL GSTEQGVNPL SSEIKQQAKE IADKWRPKLA GLNLDASNGY SLEAQAFLQL
301: LATFSIAPEF DEDELCKLVI AVSRRRQAPE FCRSLGLTHK TPGLIEDLAS KGRQIDAVHF AHAFQLTDQF PPVPLLKAYL RDLKDAKETN EDTSTAAVQK
401: DSASDELGAI RAVIKCIEEY KLQEEYPLDP LQKQVAQLEK AKADKKRGGD TAKFQPKRPR ASGGYVPRRH AGAVNNWQRP PLAFDHRAPY AGGAERYAYN
501: VPPAYEAPPV HAAYGQQAHP QRAYHYPDER GPSVPYGGAT ANYGSYTNTT LHSASNNYAN YMGPGVPSAS STYGGYTGTS YQPPHQSYIC NLVWYSSSRV
601: PCFSSLRA
101: ELRDSAVSAI AEARHKYKVA SPEPIDVRGS KEKKVSTSPN DINAPNPASE EKNPDNASCE VRPRLKQLCQ QMDAKGLLKF ILEKKRNLGS LREELSLALK
201: YATEPARLVL ESLEGFYPLD QSNSPGNEDN TLQGLRRSCL LVMESAAPLL GSTEQGVNPL SSEIKQQAKE IADKWRPKLA GLNLDASNGY SLEAQAFLQL
301: LATFSIAPEF DEDELCKLVI AVSRRRQAPE FCRSLGLTHK TPGLIEDLAS KGRQIDAVHF AHAFQLTDQF PPVPLLKAYL RDLKDAKETN EDTSTAAVQK
401: DSASDELGAI RAVIKCIEEY KLQEEYPLDP LQKQVAQLEK AKADKKRGGD TAKFQPKRPR ASGGYVPRRH AGAVNNWQRP PLAFDHRAPY AGGAERYAYN
501: VPPAYEAPPV HAAYGQQAHP QRAYHYPDER GPSVPYGGAT ANYGSYTNTT LHSASNNYAN YMGPGVPSAS STYGGYTGTS YQPPHQSYIC NLVWYSSSRV
601: PCFSSLRA
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.