Factsheet for GSMUA_Achr3P16830_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14000_001
GSMUA_Achr2P12700_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P25070_001
GSMUA_Achr3P25340_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_Achr7P14150_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr1P14000_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P25340_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29000_001	Banana	nucleus	77.55	84.44
GSMUA_Achr2P05710_001	Banana	nucleus	27.72	84.02
GSMUA_Achr9P08130_001	Banana	cytosol	72.79	79.26
HORVU5Hr1G051330.1	Barley	cytosol	59.86	65.31
TraesCS5B01G164900.2	Wheat	cytosol	60.71	64.44
TraesCS5A01G168100.1	Wheat	cytosol	59.01	64.38
TraesCS5D01G172300.2	Wheat	cytosol	60.54	64.26
Os09t0248300-01	Rice	cytosol	57.99	62.92
EES02294	Sorghum	nucleus	56.8	62.31
Os09t0248200-01	Rice	cytosol	57.65	62.2
Zm00001d019890_P001	Maize	nucleus	55.95	61.61
Zm00001d005107_P001	Maize	cytosol	55.44	61.05
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	57.48	60.04
KRH66282	Soybean	cytosol	54.59	58.79
Zm00001d019892_P001	Maize	nucleus	40.14	58.27
KRH07289	Soybean	cytosol	54.08	58.24
KRH66280	Soybean	cytosol	53.4	57.72
PGSC0003DMT400053214	Potato	cytosol	52.38	56.41
Solyc06g007640.2.1	Tomato	nucleus	51.19	56.16
PGSC0003DMT400071153	Potato	nucleus	51.19	55.23
Solyc06g082930.2.1	Tomato	nucleus	49.32	54.21
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	19.56	53.99
CDY05684	Canola	cytosol	47.45	53.97
CDY48750	Canola	cytosol	48.3	53.89
Bra020704.1-P	Field mustard	cytosol	47.45	53.76
Bra036176.1-P	Field mustard	cytosol	46.94	53.08
Bra037489.1-P	Field mustard	cytosol	49.32	53.02
CDY00066	Canola	cytosol	48.13	53.0
AT5G48385.1	Thale cress	cytosol	48.81	51.43
GSMUA_Achr5P16090_001	Banana	nucleus	38.95	37.66
GSMUA_Achr9P09220_001	Banana	nucleus	22.28	33.08
GSMUA_Achr2P12700_001	Banana	nucleus	25.34	30.47
GSMUA_Achr6P24860_001	Banana	nucleus	24.32	29.48
GSMUA_AchrUn_...	Banana	cytosol, nucleus	11.56	29.06
GSMUA_Achr4P28440_001	Banana	cytosol	15.14	28.99
GSMUA_Achr7P01520_001	Banana	nucleus	23.81	28.69
GSMUA_Achr10P...	Banana	nucleus	23.64	26.78
CDX86307	Canola	nucleus	49.15	19.36
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	50.0	18.18
Bra037488.1-P	Field mustard	cytosol	0.17	0.11

Protein Annotations

EnsemblPlants:GSMUA_Achr3P16830_001	EnsemblPlants:GSMUA_Achr3T16830_001	EnsemblPlantsGene:GSMUA_Achr3G16830_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000296BAFA
UniProt:M0SF99	MapMan:35.1	:	:	:	:

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G16830_001]

Coordinates

chr3:-:18051808..18060079

Molecular Weight (calculated)

66234.2 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.397

Length

588 amino acids

Sequence
(BLAST)

001: MYRRKPVAVF LSLSFHFLCR YVDGWLQLLL PFTAPSSSDP LIPPAATNLW IYAMADTQSV ATLIDFATSK IQQLQQAFSE LESRSAISLN LKWKELEEHF
101: HGLEKSLKKR FDRLEDQEKE YVIKVTEAQE MLEKREADVV AKELASLERL QEKRDAALSS LFDKYKTSSP EPICEGVSNG MADPVIKENF DVAAAKSGSE
201: DIYTMENANA YTEPSSRLMK LCEEMDAEGL HKFISDNRKN LSSIREEVPV ALRSAVNPFI LVLDSLKGFY AGEILGSNGK KDGNLLGLRR TCLMLMESLE
301: QLLADSLSDE QILTSDIKEK AKVIAKEWKP KLDHLDIEAS SGNSLESHAF LQLLATFDIA SEFDQDEICT LIPAVTRRRQ TVDLCRSLGL SHKMPGLINV
401: LLDSGREIEA INLAYAFKLT EQFAPVPLLK SYLKEAKKVS QGKAGSMSPG AQNEINEREL SALKAVIKCI EEHKLEEQYP VDPLQKRILQ LEKAKADKRR
501: AAEAAKPQSK RPRATGSVYT PRITSMPDKS FYRAPPERFA YPYDRQYVYP AEAHHPTLMG SAPYTISPPH TTYYGNGYQV QYQTAYLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.