Factsheet for GSMUA_Achr9P08130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14000_001
GSMUA_Achr2P12700_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P25070_001
GSMUA_Achr3P25340_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_Achr7P14150_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT5G48385.1	GSMUA_Achr1P14000_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P25340_001	AT1G15570.1	21798944
AT5G48385.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT3G22440.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT3G22440.1	21798944
AT5G48385.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT5G48385.1	GSMUA_AchrUn_...	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05710_001	Banana	nucleus	28.33	78.87
GSMUA_Achr8P29000_001	Banana	nucleus	77.59	77.59
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	79.26	72.79
HORVU5Hr1G051330.1	Barley	cytosol	60.56	60.67
TraesCS5A01G168100.1	Wheat	cytosol	60.0	60.11
TraesCS5D01G172300.2	Wheat	cytosol	60.93	59.39
EES02294	Sorghum	nucleus	58.89	59.33
TraesCS5B01G164900.2	Wheat	cytosol	60.56	59.03
Zm00001d005107_P001	Maize	cytosol	58.15	58.8
Zm00001d019890_P001	Maize	nucleus	57.96	58.61
Os09t0248300-01	Rice	cytosol	58.33	58.12
Os09t0248200-01	Rice	cytosol	58.52	57.98
KRH66282	Soybean	cytosol	58.52	57.88
KRH07289	Soybean	cytosol	57.96	57.33
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	59.63	57.19
KRH66280	Soybean	cytosol	57.59	57.17
Zm00001d019892_P001	Maize	nucleus	42.78	57.04
PGSC0003DMT400053214	Potato	cytosol	56.48	55.86
Solyc06g007640.2.1	Tomato	nucleus	55.37	55.78
Bra020704.1-P	Field mustard	cytosol	52.04	54.14
PGSC0003DMT400071153	Potato	nucleus	54.44	53.95
CDY05684	Canola	cytosol	51.48	53.77
CDY48750	Canola	cytosol	52.22	53.51
Bra037489.1-P	Field mustard	cytosol	54.07	53.38
Solyc06g082930.2.1	Tomato	nucleus	52.78	53.27
Bra036176.1-P	Field mustard	cytosol	50.19	52.12
CDY00066	Canola	cytosol	51.48	52.06
AT5G48385.1	Thale cress	cytosol	52.41	50.72
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	20.0	50.7
GSMUA_Achr5P16090_001	Banana	nucleus	42.59	37.83
GSMUA_Achr9P09220_001	Banana	nucleus	24.81	33.84
GSMUA_Achr2P12700_001	Banana	nucleus	27.78	30.67
GSMUA_Achr4P28440_001	Banana	cytosol	17.04	29.97
GSMUA_Achr6P24860_001	Banana	nucleus	26.85	29.9
GSMUA_Achr7P01520_001	Banana	nucleus	26.3	29.1
GSMUA_AchrUn_...	Banana	cytosol, nucleus	12.41	28.63
GSMUA_Achr10P...	Banana	nucleus	26.11	27.17
CDX86307	Canola	nucleus	53.89	19.49
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	52.96	17.69
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:GSMUA_Achr9P08130_001	EnsemblPlants:GSMUA_Achr9T08130_001	EnsemblPlantsGene:GSMUA_Achr9G08130_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	UniParc:UPI000295E9DE	UniProt:M0TYH2	MapMan:35.1

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G08130_001]

Coordinates

chr9:-:5191861..5195108

Molecular Weight (calculated)

60646.4 Da

IEP (calculated)

5.827

GRAVY (calculated)

-0.435

Length

540 amino acids

Sequence
(BLAST)

001: MEDIHSVATL IDSTTSKIQQ LQHAFAELES LNAISLNLKW KELEEHFRGL ETSLKKRFDE LEVEETKYVT KVKEAQEMLE SREAAVVAKE LASLEQLQEK
101: RDAALSALFD TYKTSPDPIA EGVGPRNGMT DVISEENSDV TYAKSSLEDV YHAENVNPHN EHPTELVKLC EEMDAEGLHK FISDNRKNLS SIREEMPAAL
201: RRAANPFSLV LDSLKGFYAG EILGSDGKKD GNLLGLRRTC LMLMESLEQL LADAVPGSLS DKQILTSDIK EKAKVITKEW KPKLDHLGIE ASSGNSLEAH
301: AYLQLLATFD IVSEFDQDEI CKLIPAVARR RQTVDLCCSL GLSNRMPGLI EYLLNSGRQI EAVNLACAFK LTEQFPPVPL LKAYLKDARK VAQVKAGSIS
401: PGAQNEMNER ELAALKIVIK CIEEHKLEEQ YPVDPLQKRI VLLEKAKADK KRVAEVAKPQ SKRPRATGCI YTARITSMPD KSFYRALPER SPYPYDMQYA
501: YAAENHYPLR MGSAPYSISP TQTNYYGNSY QVHYQTAYLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.