CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91301
KRG97711
KRH06147
KRH14933
KRH31163
KRH35520
KRH44391
KRH47513
KRH47571
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	KRH44391	AT1G15570.1	21798944
AT5G48385.1	KRH47513	AT1G15570.1	21798944
AT5G48385.1	KRG97711	AT3G08530.1	21798944
AT5G48385.1	KRH14933	AT3G08530.1	21798944
AT5G48385.1	KRH31163	AT3G08530.1	21798944
AT5G48385.1	KRH73205	AT3G08530.1	21798944
AT5G48385.1	KRH06147	AT3G13990.1	21798944
AT5G48385.1	KRH47571	AT3G13990.1	21798944
AT5G48385.1	KRG91301	AT3G22440.1	21798944
AT5G48385.1	KRH35520	AT3G22440.1	21798944
AT5G48385.1	KRG91301	AT4G14900.1	21798944
AT5G48385.1	KRH35520	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07289	Soybean	cytosol	95.24	95.24
KRH66280	Soybean	cytosol	88.83	89.15
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	75.64	73.36
PGSC0003DMT400053214	Potato	cytosol	67.95	67.95
Solyc06g007640.2.1	Tomato	nucleus	66.67	67.91
PGSC0003DMT400071153	Potato	nucleus	66.3	66.42
Solyc06g082930.2.1	Tomato	nucleus	64.84	66.17
CDY05684	Canola	cytosol	61.17	64.6
Bra020704.1-P	Field mustard	cytosol	60.62	63.78
CDY48750	Canola	cytosol	60.99	63.19
GSMUA_Achr2P05710_001	Banana	nucleus	22.34	62.89
Bra037489.1-P	Field mustard	cytosol	62.27	62.16
Bra036176.1-P	Field mustard	cytosol	58.79	61.73
AT5G48385.1	Thale cress	cytosol	62.64	61.29
CDY00066	Canola	cytosol	59.16	60.49
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	23.44	60.09
GSMUA_Achr8P29000_001	Banana	nucleus	58.61	59.26
GSMUA_Achr9P08130_001	Banana	cytosol	57.88	58.52
EES02294	Sorghum	nucleus	54.95	55.97
HORVU5Hr1G051330.1	Barley	cytosol	54.95	55.66
TraesCS5A01G168100.1	Wheat	cytosol	54.58	55.29
Zm00001d005107_P001	Maize	cytosol	54.03	55.24
Zm00001d019890_P001	Maize	nucleus	54.03	55.24
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	58.79	54.59
TraesCS5D01G172300.2	Wheat	cytosol	55.31	54.51
Os09t0248300-01	Rice	cytosol	54.03	54.43
TraesCS5B01G164900.2	Wheat	cytosol	54.95	54.15
Zm00001d019892_P001	Maize	nucleus	39.74	53.58
Os09t0248200-01	Rice	cytosol	52.93	53.03
KRH04492	Soybean	nucleus	38.64	38.16
KRH58029	Soybean	nucleus	38.46	37.97
KRG91301	Soybean	cytosol	27.66	28.82
KRH35520	Soybean	cytosol	27.66	28.49
KRH41582	Soybean	nucleus	25.64	26.92
KRH60292	Soybean	nucleus	25.46	26.73
KRH73863	Soybean	nucleus	25.27	26.59
KRH46301	Soybean	cytosol	25.82	25.82
KRG98570	Soybean	cytosol, nucleus, plastid	25.64	25.5
CDX86307	Canola	nucleus	62.09	22.71
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	61.54	20.78
KRH63904	Soybean	nucleus	18.68	16.97
KRH54046	Soybean	nucleus	18.13	16.72
Bra037488.1-P	Field mustard	cytosol	0.18	0.11

Protein Annotations

EMBL:ACUP02001936	EnsemblPlants:KRH66282	EnsemblPlantsGene:GLYMA_03G096400	EntrezGene:100807523	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	ProteinID:KRH66281.1	ProteinID:KRH66282
ProteinID:KRH66282.1	ProteinID:KRH66283.1	UniParc:UPI0002336E84	UniProt:K7KE22	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:+:28359115..28365266

Molecular Weight (calculated)

61302.8 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.520

Length

546 amino acids

Sequence
(BLAST)

001: MEDSDSVATL IDSTTSKIQQ LQKAFAELES YRAVTLNLKW KELEEHFHGL EKSLKRRFDE LEDQEKEFEN KTRKAREILE KREAAVFAKE QDSLQRLQEK
101: RDAASFAIVN AREKQRKISS RELATFSNGG KGGMPGVEEK PVDTLSTAAE GNVEDVKLPD NGNVELVSYP ELVKLCKEMD AAGLHKFISD NRKNLAAVRD
201: EIPNALRAAP NAACLVLDSL EGFYCTEVSN QDVKKDANLL GLRRTCIMLM ECLCDFLSSS GFVSNVISED IKDRAKAVAE EWKPRLDALD MDASNGNSLE
301: AHAFLQLLAS FGIASGFDEE ELSRLIPMVS RRRQTADLCR FLGLSEKMPG VIEVLVNSGR QIDAVNLAFA FDLTEQFCPV SLLKSYLKDA RKASSPVRSA
401: HSSPTAQIEV NERELVALKA VIKCIEEHKL DEQYPLDPLQ KRLVQLEKAK ADKKRETEAT KPQPKRPRAN GVGYGPRVTN ILSDKTCYAR VADRYPQYVY
501: DRPPYMYPAP TENHCPPLMT TATYNISPSH GNYFGNGYQY QASYLH

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.