CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60292	Soybean	nucleus	93.46	93.46
VIT_11s0016g04070.t01	Wine grape	nucleus	58.46	57.04
GSMUA_Achr10P...	Banana	nucleus	42.31	42.39
PGSC0003DMT400047832	Potato	nucleus	42.88	41.92
Solyc11g071340.1.1	Tomato	nucleus	38.08	41.34
KRG91301	Soybean	cytosol	34.23	33.97
KRH35520	Soybean	cytosol	34.23	33.58
KRH66280	Soybean	cytosol	27.5	26.29
KRH07289	Soybean	cytosol	27.5	26.19
Os01t0181000-00	Rice	nucleus	29.81	26.05
KRH66282	Soybean	cytosol	26.92	25.64
Zm00001d039594_P001	Maize	extracellular, plasma membrane	29.42	23.94
KXG31679	Sorghum	nucleus	28.85	23.7
TraesCS3A01G117300.1	Wheat	cytosol, nucleus, plastid	29.62	23.55
TraesCS3D01G119200.1	Wheat	cytosol, nucleus, plastid	29.62	23.37
KRH58029	Soybean	nucleus	24.62	23.15
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	29.23	23.1
KRH04492	Soybean	nucleus	23.46	22.06
HORVU3Hr1G021380.1	Barley	nucleus	15.77	20.76
KRH73863	Soybean	nucleus	19.62	19.65
KRG98570	Soybean	cytosol, nucleus, plastid	20.0	18.94
KRH46301	Soybean	cytosol	19.81	18.86
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	5.38	17.18
HORVU0Hr1G036250.1	Barley	cytosol	6.54	16.27
HORVU3Hr1G033120.2	Barley	nucleus	8.27	15.93
KRH54046	Soybean	nucleus	15.77	13.85
KRH63904	Soybean	nucleus	15.0	12.98

Protein Annotations

EntrezGene:100814061	MapMan:35.1	EMBL:ACUP02004772	ncoils:Coil	InterPro:Frigida	EnsemblPlantsGene:GLYMA_08G039100
GO:GO:0000003	GO:GO:0003674	GO:GO:0005215	GO:GO:0005319	GO:GO:0006810	GO:GO:0006869
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
UniProt:I1KQ25	EnsemblPlants:KRH41582	ProteinID:KRH41582	ProteinID:KRH41582.1	ProteinID:KRH41583.1	PFAM:PF07899
PANTHER:PTHR31791	PANTHER:PTHR31791:SF10	UniParc:UPI0002338887	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:3056520..3059898

Molecular Weight (calculated)

57613.8 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.546

Length

520 amino acids

Sequence
(BLAST)

001: MATRVHQFFD ELEAKKTILA KCTDLFTTLS THFSSLQHSV AEKSQSLDSK LQSLDSLSKE TLESLHRRET SIPERESSAA ARIKEQREAA LAELLRATPP
101: PDPDLSATLK SLWRKMDAAA LLRFVVSKRK ESASLRAEIA AAMEEAVDPA RLVVEAVEEF LKSKVAKSGV TDKRWACGLV IQALMVSSES REHSRKIVER
201: AVAVVETWKE HLDGESESGA AEVVMFLQMV VCFGLRSRFD DDYLRNFVMQ FASRRDMAKL AASLQFGDKI IDIIDELIKN GKEIEAVYFS SESGLTERFP
301: PIDLLKSYHR NYKKNVSAIF KKGNNNHATM DDSSTSELNS IKAIIKCVED HKLESEFNLD NLRKRATLLE KAKAEKKKGS TSRSKPQNKR GSGSSSSRPA
401: KSAKFNSAHS SSFSRRNLAP SLQPSPGARF SAPFNYPSQT IYNGATANPY AATYGTSHTQ SPAGITQQHY SIPVDNLGPS GYRSSGSYSG QTSYGLYDYR
501: NGAPPTYPPP YSVDETTYRG

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.