CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98570
KRH12539
KRH37493
KRH46301
KRH54046
KRH63904
KRH73863

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	KRH12539	AT2G06005.1	19429606
AT4G00650.1	KRH37493	AT2G06005.1	19429606
AT4G00650.1	KRH54046	AT4G00650.1	17138694
AT4G00650.1	KRH63904	AT4G00650.1	17138694
AT4G00650.1	KRH54046	AT4G00650.1	19429606
AT4G00650.1	KRH63904	AT4G00650.1	19429606
AT4G00650.1	KRG98570	AT5G16320.1	19429606
AT4G00650.1	KRH46301	AT5G16320.1	19429606
AT4G00650.1	KRH73863	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63904	Soybean	nucleus	88.34	87.02
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	21.79	44.33
VIT_19s0014g00060.t01	Wine grape	nucleus	20.27	37.85
CDY05835	Canola	cytosol, nucleus, plastid	21.28	35.1
Bra035723.1-P	Field mustard	plastid	21.28	34.43
AT4G00650.1	Thale cress	plastid	17.4	32.8
CDY32645	Canola	nucleus	31.93	32.42
Bra029192.1-P	Field mustard	nucleus, plastid	31.08	31.35
CDX71688	Canola	nucleus	30.41	30.77
CDY38847	Canola	nucleus, plastid	30.91	30.7
Solyc03g117910.2.1	Tomato	plastid	17.74	30.43
Solyc12g042440.1.1	Tomato	nucleus, plastid	26.86	29.07
Solyc03g117930.2.1	Tomato	nucleus	28.72	28.91
PGSC0003DMT400037427	Potato	nucleus, plastid	26.52	28.39
PGSC0003DMT400080001	Potato	nucleus	29.73	24.58
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	23.65	24.48
Solyc03g117920.1.1	Tomato	nucleus	14.7	24.37
PGSC0003DMT400084922	Potato	cytosol	15.88	23.74
Solyc04g072200.1.1	Tomato	cytosol	28.55	23.5
PGSC0003DMT400080000	Potato	nucleus	27.36	21.51
EER93089	Sorghum	plastid	16.05	20.56
PGSC0003DMT400094724	Potato	nucleus	26.69	20.26
Os03t0851400-01	Rice	extracellular	14.7	19.86
KRG91301	Soybean	cytosol	16.89	19.08
KRH35520	Soybean	cytosol	16.89	18.87
TraesCS4A01G329000.1	Wheat	plastid	15.54	18.59
KRH66280	Soybean	cytosol	16.89	18.38
KRH66282	Soybean	cytosol	16.72	18.13
KRH07289	Soybean	cytosol	16.72	18.13
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	15.71	17.48
TraesCS5B01G543400.1	Wheat	plastid	14.86	16.89
TraesCS5D01G544800.1	Wheat	mitochondrion	15.71	16.58
KRH60292	Soybean	nucleus	14.53	16.54
KRG98570	Soybean	cytosol, nucleus, plastid	14.7	15.85
KRH41582	Soybean	nucleus	13.85	15.77
KRH73863	Soybean	nucleus	13.68	15.61
KRH58029	Soybean	nucleus	14.19	15.19
KRH04492	Soybean	nucleus	14.19	15.19
KRH46301	Soybean	cytosol	13.85	15.02

Protein Annotations

EMBL:ACUP02003491	EnsemblPlants:KRH54046	EnsemblPlantsGene:GLYMA_06G162100	EntrezGene:100784969	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	PFAM:PF07899	ProteinID:KRH54046	ProteinID:KRH54046.1
SEG:seg	UniParc:UPI00023384A4	UniProt:K7KVE1	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:-:13381977..13386096

Molecular Weight (calculated)

64878.8 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.460

Length

592 amino acids

Sequence
(BLAST)

001: METPENAAYC SSWLPPEDEN DSGAKLAKSV NKLNDLAVAI QAFNNRYEEL QKHLEFIEQA IDTRTKELRA LGYNSTQGTA ENGVVQSDSN PKPEEAKAVE
101: KEKEKVKEEE KEKEDELITL CKTMNSRGLR KYVLTRLSET ASLREQVPVA LRSAAKPSRL VFECIGRFFL QGSKAYTKNS PMVPARQVSV LVLEHYLLSG
201: CVGNEKDVEA SLKREADSAA VAWRKRMFVE GGLLKAAEVD ARGLILFVAG FGIPSVFKDE DIYNLVCVSN GREFSDALLQ SQPLLKRVSD VADGMMKKGM
301: AVKAVDLAYT FGFEEKYSPQ TALTSFLQKS EETWKKAKQD ARDFPSALKV AHEKYLAALQ SVVKCLEGHK IDPVKFLPGW QLKNKITNLE KDISDTNKKI
401: DEKSMLKRKV DKNNSSNKMK IPEAKRARFT GKDASVLSPS LATLQEQRIF SRMDGNSSYD GSLSAHLLDG RSYGNYPNNY LTAASASDSL AEKYLGSAVA
501: SGANMLGGAM GGSFSGYQGD MYRYHGIGEG ALSHDRSVGQ SFVGQSASTL NNLYGKTSTE GFAGVPEHLS VGASSRSGGS DLYGFADAVF DM

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.