Factsheet for PGSC0003DMT400084922

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036725
PGSC0003DMT400037427
PGSC0003DMT400048982
PGSC0003DMT400052836
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	PGSC0003DMT400048982	AT2G06005.1	19429606
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400052836	AT4G17060.1	19429606
AT4G00650.1	PGSC0003DMT400036725	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	22.98	31.27
CDY05835	Canola	cytosol, nucleus, plastid	24.75	27.3
Bra035723.1-P	Field mustard	plastid	24.75	26.78
AT4G00650.1	Thale cress	plastid	21.21	26.75
PGSC0003DMT400080001	Potato	nucleus	44.7	24.72
PGSC0003DMT400080000	Potato	nucleus	43.18	22.71
PGSC0003DMT400094724	Potato	nucleus	35.61	18.08
PGSC0003DMT400037427	Potato	nucleus, plastid	25.0	17.9
CDX71688	Canola	nucleus	24.49	16.58
KRH54046	Soybean	nucleus	23.74	15.88
Bra029192.1-P	Field mustard	nucleus, plastid	23.48	15.84
CDY32645	Canola	nucleus	22.98	15.61
CDY38847	Canola	nucleus, plastid	23.48	15.6
KRH63904	Soybean	nucleus	23.48	15.47
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	20.2	15.04
EER93089	Sorghum	plastid	17.17	14.72
Os03t0851400-01	Rice	extracellular	16.16	14.61
TraesCS4A01G329000.1	Wheat	plastid	17.93	14.34
TraesCS5B01G543400.1	Wheat	plastid	18.69	14.2
PGSC0003DMT400053214	Potato	cytosol	18.69	13.55
PGSC0003DMT400071153	Potato	nucleus	17.93	13.03
TraesCS5D01G544800.1	Wheat	mitochondrion	18.18	12.83
PGSC0003DMT400077344	Potato	nucleus	13.64	10.51
PGSC0003DMT400047832	Potato	nucleus	13.64	10.15
PGSC0003DMT400065090	Potato	nucleus	14.65	9.54
VIT_19s0014g00060.t01	Wine grape	nucleus	3.54	4.42
PGSC0003DMT400036725	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400084922	EnsemblPlantsGene:PGSC0003DMG400034493	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	PGSC:PGSC0003DMG400034493	SEG:seg	UniParc:UPI0002955BA8	UniProt:M1D8D0
MapMan:35.1	:	:	:	:	:

Description

FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400034493]

Coordinates

chr6:+:54887568..54888836

Molecular Weight (calculated)

44215.7 Da

IEP (calculated)

4.019

GRAVY (calculated)

-0.550

Length

396 amino acids

Sequence
(BLAST)

001: MSTIDEPPDT GNATPPLATQ LVQTEQKEVT EQKHSELPTH SRELIIANLR KLSDSLSTFQ RCLTGLRLHI DSSCNSIHSF SMLLLPPPYT TNTNSLSPPA
101: VSIPEPEPSR EFDPSVEEEE EEEEEEEEVG VGVGVGVGEE EEEEVEEEEE EVVGVEEEEE EEEEVEKEEE EEEDEDEDEE EVVGMGVGEE EEEVGEGEEE
201: EGEGVKTPLC PELAGLCKAM DNRGLKNYMV KHLSDKKRLR EQVPKALKLS ENPAMLVLKC LDKFYLQGSR AYGERVVEIA EGVKKDAKQA ALAWKERLNS
301: EGGVRKAYDM DARGLLLLLG CFGIPSYGFL HSDISYLLQL GAKLISGVLR RSNIFMEYIP KLIQWGVKGN VINAIDIAYT FGFEDKFDPL GLLTSF

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.