CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98570
KRH12539
KRH37493
KRH46301
KRH54046
KRH63904
KRH73863

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	KRH12539	AT2G06005.1	19429606
AT4G00650.1	KRH37493	AT2G06005.1	19429606
AT4G00650.1	KRH54046	AT4G00650.1	17138694
AT4G00650.1	KRH63904	AT4G00650.1	17138694
AT4G00650.1	KRH54046	AT4G00650.1	19429606
AT4G00650.1	KRH63904	AT4G00650.1	19429606
AT4G00650.1	KRG98570	AT5G16320.1	19429606
AT4G00650.1	KRH46301	AT5G16320.1	19429606
AT4G00650.1	KRH73863	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54046	Soybean	nucleus	87.02	88.34
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	21.3	43.99
VIT_19s0014g00060.t01	Wine grape	nucleus	20.97	39.75
CDY05835	Canola	cytosol, nucleus, plastid	20.8	34.82
Bra035723.1-P	Field mustard	plastid	20.8	34.15
AT4G00650.1	Thale cress	plastid	17.14	32.8
CDY32645	Canola	nucleus	31.78	32.76
Bra029192.1-P	Field mustard	nucleus, plastid	31.28	32.03
CDY38847	Canola	nucleus, plastid	30.95	31.21
Solyc12g042440.1.1	Tomato	nucleus, plastid	27.95	30.71
CDX71688	Canola	nucleus	29.78	30.6
PGSC0003DMT400037427	Potato	nucleus, plastid	28.12	30.56
Solyc03g117910.2.1	Tomato	plastid	16.97	29.57
Solyc03g117930.2.1	Tomato	nucleus	28.45	29.08
Solyc03g117920.1.1	Tomato	nucleus	15.31	25.77
PGSC0003DMT400080001	Potato	nucleus	29.95	25.14
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	23.13	24.3
Solyc04g072200.1.1	Tomato	cytosol	28.79	24.06
PGSC0003DMT400084922	Potato	cytosol	15.47	23.48
PGSC0003DMT400080000	Potato	nucleus	27.29	21.78
EER93089	Sorghum	plastid	16.47	21.43
PGSC0003DMT400094724	Potato	nucleus	26.12	20.13
Os03t0851400-01	Rice	extracellular	14.64	20.09
TraesCS4A01G329000.1	Wheat	plastid	15.81	19.19
KRH66280	Soybean	cytosol	17.14	18.93
KRG91301	Soybean	cytosol	16.47	18.89
KRH66282	Soybean	cytosol	16.97	18.68
KRH35520	Soybean	cytosol	16.47	18.68
KRH07289	Soybean	cytosol	16.81	18.5
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	15.81	17.86
TraesCS5B01G543400.1	Wheat	plastid	15.31	17.66
TraesCS5D01G544800.1	Wheat	mitochondrion	15.81	16.93
KRH60292	Soybean	nucleus	13.98	16.15
KRH04492	Soybean	nucleus	14.81	16.09
KRH73863	Soybean	nucleus	13.81	15.99
KRH58029	Soybean	nucleus	14.64	15.91
KRG98570	Soybean	cytosol, nucleus, plastid	14.48	15.85
KRH46301	Soybean	cytosol	13.98	15.38
KRH41582	Soybean	nucleus	12.98	15.0

Protein Annotations

EMBL:ACUP02002728	EnsemblPlants:KRH63904	EnsemblPlantsGene:GLYMA_04G203400	EntrezGene:100801324	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	PFAM:PF07899	ProteinID:KRH63904	ProteinID:KRH63904.1
ProteinID:KRH63905.1	SEG:seg	UniParc:UPI0002339D8F	UniProt:K7KLA6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:+:47611156..47615804

Molecular Weight (calculated)

65761.9 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.360

Length

601 amino acids

Sequence
(BLAST)

001: MEETPEHVSY CPLSLPPEDE NNSGAKLAKS VNELNDLAVA IQAFKNRYDE LQKHLEFIEQ AIHTRTKELR ALGANSAQGT AENGVVQLDS NPKPEVTQAE
101: EREEEEEEDE LLTLCKTMNS RGLRKYVLTR LSETASLREQ VPLALRSAPN PSRLVFECIG RFFLQGSKAY TKDSPMIPAR QVSVLVLEYY LLSGCVGNEV
201: DLEASLKREV DSAAVAWRKR IFVEGGLLKA AEVDARGLIL FIAIFGIPTV FKDEDIYSLV SASNGREFSD ALLKSQPLLK RVSDVADGMI KKGMAVKAVD
301: LAYTFGFEEK YSPRTALTSF LQKSEETWKK AKQDARDFPS ALKVAHEKYL AALKSVVNCL EGHKIDFVKL LPGWQLKNKI TNLEKDIGDA NKKIEEKSML
401: KRKVDKNNSS NKMKIPEAKR TRFTGKDASV LSPSLAILQE QRIVSHMDGN SSYDGSLSAL LLDGRSYGNY PNNYLAAASI SDSLAEKYLG STVASGANML
501: GGAMGGSYSG YQGDMIRDNV GTVLNSNSHL YRYHGIGEGA LSHDRPVGQS FVGQSASTLN NLYGKTSTEG FAGVPEHLSI GASSRSGGSD LYGFADAVFD
601: A

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.