Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g008840.2.1 | Tomato | nucleus | 92.11 | 93.02 |
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 53.45 | 56.33 |
| KRH04492 | Soybean | nucleus | 43.91 | 48.28 |
| KRH58029 | Soybean | nucleus | 42.76 | 47.02 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 43.09 | 43.09 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 37.99 | 37.08 |
| Os07t0592300-01 | Rice | nucleus | 37.01 | 37.01 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 37.99 | 36.61 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 37.66 | 36.35 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 37.66 | 36.23 |
| PGSC0003DMT400071153 | Potato | nucleus | 31.74 | 35.41 |
| EER99638 | Sorghum | cytosol | 35.86 | 35.33 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 36.02 | 35.15 |
| Zm00001d006752_P003 | Maize | nucleus | 37.34 | 34.66 |
| PGSC0003DMT400053214 | Potato | cytosol | 31.09 | 34.62 |
| PGSC0003DMT400047832 | Potato | nucleus | 25.0 | 28.57 |
| PGSC0003DMT400077344 | Potato | nucleus | 22.53 | 26.65 |
| PGSC0003DMT400084922 | Potato | cytosol | 9.54 | 14.65 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 12.17 | 13.38 |
| PGSC0003DMT400080001 | Potato | nucleus | 14.31 | 12.15 |
| PGSC0003DMT400080000 | Potato | nucleus | 14.14 | 11.42 |
| PGSC0003DMT400094724 | Potato | nucleus | 14.31 | 11.15 |
| PGSC0003DMT400036725 | Potato | nucleus | 2.96 | 6.62 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065090 | EnsemblPlantsGene:PGSC0003DMG400025294 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF4 |
| PFAM:PF07899 | PGSC:PGSC0003DMG400025294 | SEG:seg | UniParc:UPI00029481F1 | UniProt:M1CDD4 | MapMan:35.1 |
Description
Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400025294]
Coordinates
chr4:-:3969806..3973469
Molecular Weight (calculated)
66454.2 Da
IEP (calculated)
5.736
GRAVY (calculated)
-0.449
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETDLQMMI SNVPSLIEQL GKALNDLESH ENASVDKDLI KDIIGHFRNL EAAVVKKSLE LEIREKAFKE QESDAHLQIA SREADIAARE QKFWDHLQEL
101: KDAAVSAIAA ARGDHQVESP EHTDAEDSKD IEVSSSLGIT NALHIGSEVK SSGSAAENAD GASGKVEPRP ELTQLCEQMD AKGLLHYIIG SKKKMTSISE
201: ELSVALDGAT EPGRLVLASL EFFYSNDESN SQDEKGKNAI RSLRQACLVC MEAIASLLAK AKPGADHLLF PEIKQQAKAI ADEWKPKLAT AGTDAANQAS
301: LETEAFLQLI ATFRIASEFD EEELCKLVLA VAHNRQGPEL CRSLGLAHKM PGVIEALIHS EKQIDAARFI HSYELTERFP LVPLLKGYLK DLRRNAQGKG
401: GNSGNAEELA AVKAIVQCIR DYKLEAEYPL DPLLRRVAQL EKAISNDKDR SNDKKRPSGS GKHQHFKRPR VTGGTHGSIR HPNVLSIQPQ SVLIERAAAN
501: NPSRLVPSVL VERAAHPGLL DKYAYLSTSY DYQPPSQATY PQQSYEQRSY YYPADEGIAA SSYTAAPLSS SYASYSGGIL PTADERINAS SYGNYAGSGT
601: PTAYQPYM
101: KDAAVSAIAA ARGDHQVESP EHTDAEDSKD IEVSSSLGIT NALHIGSEVK SSGSAAENAD GASGKVEPRP ELTQLCEQMD AKGLLHYIIG SKKKMTSISE
201: ELSVALDGAT EPGRLVLASL EFFYSNDESN SQDEKGKNAI RSLRQACLVC MEAIASLLAK AKPGADHLLF PEIKQQAKAI ADEWKPKLAT AGTDAANQAS
301: LETEAFLQLI ATFRIASEFD EEELCKLVLA VAHNRQGPEL CRSLGLAHKM PGVIEALIHS EKQIDAARFI HSYELTERFP LVPLLKGYLK DLRRNAQGKG
401: GNSGNAEELA AVKAIVQCIR DYKLEAEYPL DPLLRRVAQL EKAISNDKDR SNDKKRPSGS GKHQHFKRPR VTGGTHGSIR HPNVLSIQPQ SVLIERAAAN
501: NPSRLVPSVL VERAAHPGLL DKYAYLSTSY DYQPPSQATY PQQSYEQRSY YYPADEGIAA SSYTAAPLSS SYASYSGGIL PTADERINAS SYGNYAGSGT
601: PTAYQPYM
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.