Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 98.02 | 97.88 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 96.66 | 97.25 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 54.86 | 91.39 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 36.17 | 88.15 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 24.92 | 78.47 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 18.39 | 74.23 |
| Os01t0181000-00 | Rice | nucleus | 60.33 | 66.72 |
| KXG31679 | Sorghum | nucleus | 59.27 | 61.61 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 57.14 | 58.84 |
| GSMUA_Achr10P... | Banana | nucleus | 28.72 | 36.42 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 23.71 | 29.27 |
| KRH41582 | Soybean | nucleus | 23.1 | 29.23 |
| KRH60292 | Soybean | nucleus | 22.95 | 29.04 |
| PGSC0003DMT400047832 | Potato | nucleus | 20.82 | 25.75 |
| Solyc11g071340.1.1 | Tomato | nucleus | 18.09 | 24.84 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 20.36 | 24.14 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 17.78 | 21.12 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 17.93 | 18.67 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 11.85 | 15.66 |
| TraesCS5B01G543400.1 | Wheat | plastid | 10.18 | 12.86 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G136400.1 | EnsemblPlantsGene:TraesCS3B01G136400 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF10 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:119116224..119120112
Molecular Weight (calculated)
71521.3 Da
IEP (calculated)
4.374
GRAVY (calculated)
-0.507
Length
658 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVQTKAQLL PSQHGHEAIS KLPPIQLQRL PALAAMATTD DPTATGEVRR LLEHLDSQQQ LLATCHEAWS RTLAHFASLD QDVASRSASV DEALAAADAS
101: TSESLAALEA REASVPVRLA EASDALSAAL AEAEAESAAP PPADIRGALR WICRRMDAAA LWRFMAARRR ELAAVRKEIA PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKKDSPA PINEEVEMTE ADNVDNAAVP DKKVEQADAK EEEEEEEVEE
301: VEEEEEEEEE EEEEEEEEEE DQEELVAASG DEEEENPEEV DNETQEDPEE AGMEALKEKK GEEVKVEVPA DEKIAEEAGK SEVKEETKAT GEVVKEGEKG
401: ALGQVEAHLF LQMIAAFGLK DKFDGEFLKS LFVANRRRKE LARFAFILGF EETVADVVQE LVTSGNVIEA IYIAHEACLL ERFPPAPLLN SYIKDSTEKA
501: QAILSSGRRS SSSVEESKTL ECNACKAIIR CVESCQLVSV FNIDHLKKKV ARMDREKADR KRLGSGNRFQ NKRARGAAGP QSFPASKSAR ASGSGPGYGP
601: SFQNPVSRSF GYAARAGYVN PAAAAQPYYA PGSMAARRGG VLYGGPGAAF GAQQPYHR
101: TSESLAALEA REASVPVRLA EASDALSAAL AEAEAESAAP PPADIRGALR WICRRMDAAA LWRFMAARRR ELAAVRKEIA PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKKDSPA PINEEVEMTE ADNVDNAAVP DKKVEQADAK EEEEEEEVEE
301: VEEEEEEEEE EEEEEEEEEE DQEELVAASG DEEEENPEEV DNETQEDPEE AGMEALKEKK GEEVKVEVPA DEKIAEEAGK SEVKEETKAT GEVVKEGEKG
401: ALGQVEAHLF LQMIAAFGLK DKFDGEFLKS LFVANRRRKE LARFAFILGF EETVADVVQE LVTSGNVIEA IYIAHEACLL ERFPPAPLLN SYIKDSTEKA
501: QAILSSGRRS SSSVEESKTL ECNACKAIIR CVESCQLVSV FNIDHLKKKV ARMDREKADR KRLGSGNRFQ NKRARGAAGP QSFPASKSAR ASGSGPGYGP
601: SFQNPVSRSF GYAARAGYVN PAAAAQPYYA PGSMAARRGG VLYGGPGAAF GAQQPYHR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.