Factsheet for Zm00001d039594_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31679	Sorghum	nucleus	84.19	84.99
Os01t0181000-00	Rice	nucleus	56.65	60.84
TraesCS3A01G117300.1	Wheat	cytosol, nucleus, plastid	59.47	58.1
TraesCS3D01G119200.1	Wheat	cytosol, nucleus, plastid	59.62	57.81
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	58.84	57.14
HORVU3Hr1G021380.1	Barley	nucleus	32.08	51.9
HORVU3Hr1G033120.2	Barley	nucleus	19.87	47.04
HORVU0Hr1G036250.1	Barley	cytosol	14.4	44.02
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	10.02	39.26
GSMUA_Achr10P...	Banana	nucleus	28.95	35.65
VIT_11s0016g04070.t01	Wine grape	nucleus	27.07	32.46
KRH41582	Soybean	nucleus	23.94	29.42
KRH60292	Soybean	nucleus	23.79	29.23
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	25.98	28.72
Zm00001d018911_P001	Maize	cytosol	25.82	27.18
PGSC0003DMT400047832	Potato	nucleus	22.22	26.69
Solyc11g071340.1.1	Tomato	nucleus	19.25	25.68
Zm00001d005107_P001	Maize	cytosol	19.72	23.6
Zm00001d019890_P001	Maize	nucleus	18.47	22.1
Zm00001d019892_P001	Maize	nucleus	13.77	21.73
Zm00001d022016_P001	Maize	extracellular, plasma membrane	18.62	19.1
Zm00001d006752_P003	Maize	nucleus	18.94	18.47
Zm00001d028173_P002	Maize	plastid	12.83	16.02

Protein Annotations

EMBL:BT040383	EMBL:BT085590	EnsemblPlants:Zm00001d039594_P001	EnsemblPlants:Zm00001d039594_T001	EnsemblPlantsGene:Zm00001d039594	EntrezGene:100273178
GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF10	PFAM:PF07899
ProteinID:ONM29394.1	SEG:seg	UniParc:UPI00017B75F2	UniProt:B4FTE5	MapMan:35.1	:

Description

FRIGIDA-like protein 4a

Coordinates

chr3:+:8560758..8564979

Molecular Weight (calculated)

68389.1 Da

IEP (calculated)

4.373

GRAVY (calculated)

-0.597

Length

639 amino acids

Sequence
(BLAST)

001: MATTEDSAAA GEARRLFALL ESQQQVLSDC HGAWSRALAH FASREEDLAS RSAALDEALA AADVSTSETL AALEARESSI PARLAEASAA LSAAVAEAET
101: ESTGPPPTDI KGALRWICRR MDAAALWRFM AARRRELAVV RREAGPAVAM AVDPPRLVLD VVSDFLAAGD GVGGDQCWVL GMLLRSLFDL DGRKPPEIGD
201: TLVERAFAVT KEWQERFGIN MDNLSSEDKE VEMAEADGSE NSGATEKKEG KEDEEQEEVE EEDEEEEEEE DPEEEEEEEE EDDPEEVEEP EAPGKEGNEV
301: KGEGAEGKVS EEGEGAGGKV SEEGEGAEGR VSEEGQGAEG KVSQEGQGAE KIGHEDEKKG AAVGTMKVKT GEEGNKGASE QSEAQIFVQM VAAFGLKDKF
401: DEEFLRRLFV ANGRKRELAR IACVLGFEES LGDIVEELIK SGNAIEAIYV AHEADLLGKF PPVPLFKSYL QNSTDKAQAV LKSGRHSSSA LEEANSLEGN
501: AYRSVIRCVE SCQLQSVFPL EVLRKKLGKL EKEKSDRKKA AGPSRFPNKR SRGAAGPYPF PAAKAARGSS FGPRFQNPVS RSLNYAPHAG YINPAAASPF
601: SVPGSVSGRR GGVPYGGPGA TYGGSPSFAT GGGQQPFRR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.