Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037489.1-P | Field mustard | cytosol | 83.87 | 85.56 |
| Bra020704.1-P | Field mustard | cytosol | 79.57 | 85.55 |
| CDY05684 | Canola | cytosol | 79.03 | 85.3 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 32.26 | 84.51 |
| Bra036176.1-P | Field mustard | cytosol | 78.32 | 84.04 |
| CDY48750 | Canola | cytosol | 79.03 | 83.68 |
| CDY00066 | Canola | cytosol | 79.75 | 83.33 |
| KRH66280 | Soybean | cytosol | 61.29 | 62.87 |
| KRH66282 | Soybean | cytosol | 61.29 | 62.64 |
| KRH07289 | Soybean | cytosol | 61.11 | 62.45 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 61.47 | 60.92 |
| PGSC0003DMT400071153 | Potato | nucleus | 58.78 | 60.18 |
| PGSC0003DMT400053214 | Potato | cytosol | 58.78 | 60.07 |
| Solyc06g007640.2.1 | Tomato | nucleus | 57.53 | 59.89 |
| Solyc06g082930.2.1 | Tomato | nucleus | 56.63 | 59.07 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 19.0 | 54.64 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 51.79 | 53.52 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 51.08 | 52.88 |
| EES02294 | Sorghum | nucleus | 50.72 | 52.8 |
| TraesCS5A01G168100.1 | Wheat | cytosol | 50.72 | 52.5 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 50.72 | 52.41 |
| Zm00001d019892_P001 | Maize | nucleus | 37.99 | 52.35 |
| Zm00001d019890_P001 | Maize | nucleus | 49.82 | 52.06 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 51.43 | 51.81 |
| Zm00001d005107_P001 | Maize | cytosol | 49.28 | 51.5 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 51.08 | 51.44 |
| Os09t0248300-01 | Rice | cytosol | 49.1 | 50.55 |
| Os09t0248200-01 | Rice | cytosol | 48.39 | 49.54 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 51.43 | 48.81 |
| CDX86307 | Canola | nucleus | 83.87 | 31.35 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 83.87 | 28.94 |
| AT4G14900.1 | Thale cress | nucleus | 25.63 | 26.88 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 25.27 | 26.5 |
| AT1G31814.1 | Thale cress | cytosol | 21.68 | 25.58 |
| AT5G16320.1 | Thale cress | nucleus | 21.15 | 25.11 |
| AT4G00650.1 | Thale cress | plastid | 10.93 | 19.43 |
| AT5G27230.1 | Thale cress | nucleus | 20.97 | 12.34 |
| Bra037488.1-P | Field mustard | cytosol | 0.36 | 0.21 |
Protein Annotations
| MapMan:35.1 | EntrezGene:834893 | ProteinID:AED95663.1 | EMBL:AK176205 | EMBL:AK226356 | EMBL:AK230331 |
| ArrayExpress:AT5G48385 | EnsemblPlantsGene:AT5G48385 | RefSeq:AT5G48385 | TAIR:AT5G48385 | RefSeq:AT5G48385-TAIR-G | EnsemblPlants:AT5G48385.1 |
| TAIR:AT5G48385.1 | EMBL:AY136326 | Unigene:At.22830 | ProteinID:BAA96959.1 | EMBL:BT000104 | ncoils:Coil |
| InterPro:Frigida | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | RefSeq:NP_850923.1 |
| PFAM:PF07899 | PO:PO:0000293 | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF12 | UniProt:Q67ZB3 | UniParc:UPI000019708C |
| SEG:seg | : | : | : | : | : |
Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
Coordinates
chr5:+:19608490..19612007
Molecular Weight (calculated)
62618.9 Da
IEP (calculated)
7.039
GRAVY (calculated)
-0.539
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.