Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000822.1-P | Field mustard | nucleus | 63.97 | 41.91 |
| CDY48212 | Canola | nucleus | 63.56 | 41.64 |
| Bra031463.1-P | Field mustard | nucleus | 61.94 | 41.46 |
| CDY61993 | Canola | nucleus | 63.16 | 41.38 |
| GSMUA_Achr10P... | Banana | nucleus | 51.01 | 39.75 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 45.75 | 39.51 |
| Bra026756.1-P | Field mustard | plastid | 63.56 | 38.39 |
| CDX81722 | Canola | nucleus, plastid | 61.94 | 37.97 |
| CDY53304 | Canola | plastid | 62.75 | 37.9 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 82.59 | 37.64 |
| Bra003563.1-P | Field mustard | plastid | 63.97 | 36.57 |
| CDX79389 | Canola | plastid | 63.97 | 36.49 |
| CDY36574 | Canola | mitochondrion, nucleus | 63.97 | 36.24 |
| CDY66415 | Canola | nucleus | 63.16 | 35.94 |
| CDX67944 | Canola | plastid | 62.75 | 35.88 |
| Os12t0502300-01 | Rice | nucleus, plastid | 69.64 | 35.1 |
| CDY37592 | Canola | mitochondrion, plastid | 64.78 | 35.01 |
| CDX96836 | Canola | nucleus, plastid | 62.35 | 35.0 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 64.78 | 34.93 |
| OQU77084 | Sorghum | nucleus | 68.83 | 34.84 |
| Bra008477.1-P | Field mustard | plastid | 64.37 | 34.79 |
| CDY38664 | Canola | nucleus, plastid | 63.97 | 34.73 |
| CDY39984 | Canola | plastid | 62.75 | 34.6 |
| PGSC0003DMT400006576 | Potato | nucleus | 64.78 | 34.56 |
| KRH47513 | Soybean | nucleus | 66.4 | 34.45 |
| AT1G80370.1 | Thale cress | plastid | 63.97 | 34.27 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 67.61 | 34.08 |
| Bra016654.1-P | Field mustard | nucleus, plastid | 61.13 | 33.93 |
| Bra026120.1-P | Field mustard | nucleus | 63.97 | 33.91 |
| TraesCS5D01G121100.2 | Wheat | plastid | 69.64 | 33.86 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 61.54 | 33.78 |
| TraesCSU01G054300.1 | Wheat | nucleus | 68.42 | 33.73 |
| TraesCS5B01G114300.2 | Wheat | plastid | 69.23 | 33.73 |
| TraesCS3D01G529100.1 | Wheat | plastid | 68.83 | 33.66 |
| TraesCS3A01G523600.1 | Wheat | plastid | 68.83 | 33.53 |
| KRH44391 | Soybean | nucleus | 63.56 | 33.33 |
| CDX87305 | Canola | plastid | 62.35 | 33.33 |
| TraesCS5A01G108500.2 | Wheat | plastid | 68.42 | 33.27 |
| Bra035186.1-P | Field mustard | plastid | 61.94 | 33.12 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 67.21 | 32.74 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 63.97 | 32.71 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 68.83 | 32.63 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 63.97 | 32.58 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 46.56 | 31.94 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 50.2 | 31.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.98 | 26.51 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 49.8 | 24.5 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 49.39 | 24.4 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 21.05 | 23.96 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 33.2 | 20.4 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 33.2 | 19.29 |
| GSMUA_Achr11P... | Banana | nucleus | 31.58 | 19.12 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 32.39 | 19.05 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 31.58 | 18.4 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 33.2 | 17.94 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 31.58 | 17.93 |
| GSMUA_Achr10P... | Banana | nucleus | 32.79 | 17.88 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 32.79 | 12.13 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P14000_001 | EnsemblPlants:GSMUA_Achr1T14000_001 | EnsemblPlantsGene:GSMUA_Achr1G14000_001 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000295C1EA | UniProt:M0RZQ8 | MapMan:13.1.1.1.1 | : |
Description
Cyclin-A2-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14000_001]
Coordinates
chr1:-:10686572..10693968
Molecular Weight (calculated)
28360.7 Da
IEP (calculated)
8.245
GRAVY (calculated)
0.113
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MMISLMYLKL PSSLNCNSNC HAKLIRLVSE EYKLVPDTLY LTVYMIDQFL SQNYIERQRL QLLGITCMLI ASKYEEICTP RVEQFCLITD NTYTKAEVLK
101: MESQVLSYLG FQLSVPTTKT FLRRFLRAAH ASNKAPSLTL GYLANYLAEL TLLEYSFIKF LPSVIAASAV FLARWTLDQS SHPWNPTLEY YTTYKATDLK
201: VTIFALQELQ MNSKSCPLNA IREKYRQEKF ECVAAIASLP LVESLFS
101: MESQVLSYLG FQLSVPTTKT FLRRFLRAAH ASNKAPSLTL GYLANYLAEL TLLEYSFIKF LPSVIAASAV FLARWTLDQS SHPWNPTLEY YTTYKATDLK
201: VTIFALQELQ MNSKSCPLNA IREKYRQEKF ECVAAIASLP LVESLFS
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.