Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67944 | Canola | plastid | 94.69 | 94.91 |
| CDY38664 | Canola | nucleus, plastid | 83.83 | 79.78 |
| CDY37592 | Canola | mitochondrion, plastid | 83.83 | 79.43 |
| CDY48212 | Canola | nucleus | 66.97 | 76.92 |
| CDY61993 | Canola | nucleus | 66.97 | 76.92 |
| AT1G80370.1 | Thale cress | plastid | 81.06 | 76.14 |
| CDX87305 | Canola | plastid | 80.37 | 75.32 |
| CDY39984 | Canola | plastid | 77.83 | 75.22 |
| CDY36574 | Canola | mitochondrion, nucleus | 69.52 | 69.04 |
| CDY66415 | Canola | nucleus | 69.05 | 68.89 |
| CDX96836 | Canola | nucleus, plastid | 68.36 | 67.27 |
| CDY53304 | Canola | plastid | 63.28 | 66.99 |
| CDX81722 | Canola | nucleus, plastid | 61.43 | 66.0 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 36.49 | 63.97 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 56.12 | 49.59 |
| CDY06752 | Canola | nucleus | 32.33 | 49.12 |
| KRH47513 | Soybean | nucleus | 53.58 | 48.74 |
| CDX87087 | Canola | plastid | 45.96 | 47.72 |
| PGSC0003DMT400006576 | Potato | nucleus | 50.35 | 47.08 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 49.65 | 46.94 |
| KRH44391 | Soybean | nucleus | 51.04 | 46.92 |
| CDX97090 | Canola | nucleus | 46.19 | 45.87 |
| OQU77084 | Sorghum | nucleus | 50.81 | 45.08 |
| CDX69768 | Canola | nucleus, plastid | 45.27 | 44.85 |
| CDY22369 | Canola | nucleus | 36.26 | 44.73 |
| Os12t0502300-01 | Rice | nucleus, plastid | 50.12 | 44.29 |
| CDY17091 | Canola | nucleus | 35.57 | 43.02 |
| TraesCS5D01G121100.2 | Wheat | plastid | 50.12 | 42.72 |
| CDY17037 | Canola | nucleus, plastid | 35.8 | 42.58 |
| TraesCS5B01G114300.2 | Wheat | plastid | 49.65 | 42.41 |
| TraesCS5A01G108500.2 | Wheat | plastid | 49.65 | 42.32 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 50.81 | 42.23 |
| TraesCSU01G054300.1 | Wheat | nucleus | 48.5 | 41.92 |
| TraesCS3A01G523600.1 | Wheat | plastid | 48.96 | 41.81 |
| CDY47595 | Canola | nucleus, plastid | 35.8 | 41.78 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 20.32 | 41.71 |
| TraesCS3D01G529100.1 | Wheat | plastid | 48.5 | 41.58 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 48.5 | 41.42 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 46.19 | 41.41 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 51.5 | 41.14 |
| CDX88368 | Canola | plastid | 36.03 | 41.05 |
| CDY23653 | Canola | nucleus | 33.49 | 40.62 |
| CDY66770 | Canola | nucleus | 33.95 | 40.61 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 45.27 | 40.41 |
| CDY06757 | Canola | nucleus, plastid | 33.72 | 40.22 |
| CDY47596 | Canola | nucleus | 33.72 | 40.22 |
| CDY17039 | Canola | nucleus | 33.72 | 40.22 |
| CDX87520 | Canola | nucleus | 35.8 | 40.16 |
| CDX85466 | Canola | plastid | 38.8 | 39.81 |
| CDY41784 | Canola | plastid | 30.72 | 39.12 |
| CDY02719 | Canola | plastid | 38.34 | 38.69 |
| CDY31481 | Canola | nucleus | 18.94 | 37.79 |
| CDX92090 | Canola | mitochondrion, nucleus | 30.02 | 36.41 |
| CDY65994 | Canola | plastid | 36.95 | 36.12 |
| CDY25649 | Canola | plastid | 36.03 | 35.7 |
| CDX72551 | Canola | nucleus | 27.48 | 29.68 |
| CDY69551 | Canola | nucleus | 24.02 | 29.3 |
| CDY67210 | Canola | nucleus | 27.25 | 29.06 |
| CDY62475 | Canola | nucleus | 23.56 | 29.06 |
| CDY30357 | Canola | nucleus | 27.02 | 28.61 |
| CDX85942 | Canola | nucleus | 26.79 | 28.43 |
| CDY33634 | Canola | nucleus | 26.79 | 28.43 |
| CDX96631 | Canola | nucleus | 26.79 | 28.29 |
| CDY29184 | Canola | nucleus | 27.25 | 28.16 |
| CDY26816 | Canola | nucleus | 26.33 | 28.01 |
| CDY29520 | Canola | nucleus | 26.33 | 27.8 |
| CDY07838 | Canola | nucleus | 26.79 | 27.75 |
| CDX88261 | Canola | nucleus | 27.02 | 27.21 |
| CDX87612 | Canola | nucleus | 27.02 | 27.15 |
| CDX68105 | Canola | nucleus | 24.25 | 26.58 |
| CDX69311 | Canola | nucleus | 25.4 | 26.25 |
| CDX80988 | Canola | plastid | 25.64 | 25.93 |
| CDY11354 | Canola | plastid | 25.87 | 25.87 |
| CDX75659 | Canola | nucleus | 25.17 | 25.47 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 46.65 | 20.42 |
| CDY33338 | Canola | nucleus | 26.33 | 19.52 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.1 | 18.55 |
| CDX96819 | Canola | nucleus | 25.87 | 17.36 |
| CDY14091 | Canola | plastid | 25.64 | 16.92 |
| CDX83953 | Canola | nucleus | 25.17 | 16.64 |
| CDY04980 | Canola | nucleus | 25.87 | 15.6 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078CTM3 | EnsemblPlants:CDX79389 | ProteinID:CDX79389 | ProteinID:CDX79389.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00132095001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF346 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EF2603 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g19140D
Coordinates
chrLK031817:-:1800732..1802949
Molecular Weight (calculated)
49070.8 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.304
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNEKAVSGN TIPLHPRPIT RALARASSNL TTSSEVAATS TTLINNQGRV LRANSKRTAS DDKNANAPKR RAVLNDITNV SCENNIQIKK GRASSSKVTN
101: AKVQVVCTDT NEASSCSFIE KPSSKLPPRP PGRSTSTVER SCVGGSSIVA SSLKFIDIDS DVKDPLLCSL YAHEIHYNMR VAELKRRPSP DFMERTQRDV
201: TKTMRGILVD WLVEVSEEYT LVPDTLYLTV YLIDWFLNGN YIERQRLQLL GVTCMLIASK YEEIYAPRIE EFCFITDNTY TRDQVLEMES QVLKHFSFQI
301: YTPTSKTFLR RFLRAAQASH VMPSVEMEFL ANYLTELTLV EYEFLKFLPS VIAASAVFLA KWTMNQSSHP WNPTLEHYTT YRASDLKACV QALHELQLNT
401: KRCPLNSIRM KYKQDKFKSV AVFTSPELPD RLF
101: AKVQVVCTDT NEASSCSFIE KPSSKLPPRP PGRSTSTVER SCVGGSSIVA SSLKFIDIDS DVKDPLLCSL YAHEIHYNMR VAELKRRPSP DFMERTQRDV
201: TKTMRGILVD WLVEVSEEYT LVPDTLYLTV YLIDWFLNGN YIERQRLQLL GVTCMLIASK YEEIYAPRIE EFCFITDNTY TRDQVLEMES QVLKHFSFQI
301: YTPTSKTFLR RFLRAAQASH VMPSVEMEFL ANYLTELTLV EYEFLKFLPS VIAASAVFLA KWTMNQSSHP WNPTLEHYTT YRASDLKACV QALHELQLNT
401: KRCPLNSIRM KYKQDKFKSV AVFTSPELPD RLF
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.