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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX87588
CDX88294

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037265.1-P Field mustard nucleus 99.51 99.51
CDY26816 Canola nucleus 93.89 94.35
CDY07838 Canola nucleus 83.86 82.06
CDY29184 Canola nucleus 83.86 81.86
AT2G17620.1 Thale cress nucleus 84.35 80.42
CDX72551 Canola nucleus 73.59 75.06
CDY67210 Canola nucleus 73.59 74.14
CDY31481 Canola nucleus 35.45 66.82
KRH28901 Soybean nucleus 61.61 58.2
KRH76553 Soybean nucleus 61.37 58.1
GSMUA_Achr5P19270_001 Banana cytosol 29.34 55.3
PGSC0003DMT400093973 Potato nucleus 44.01 54.55
Solyc02g061650.1.1 Tomato nucleus 46.45 54.13
CDX85942 Canola nucleus 53.3 53.43
CDY33634 Canola nucleus 52.57 52.7
CDX68105 Canola nucleus 50.86 52.66
CDX96631 Canola nucleus 52.57 52.44
CDX88261 Canola nucleus 54.52 51.86
CDX87612 Canola nucleus 54.28 51.51
CDY29520 Canola nucleus 51.34 51.22
GSMUA_Achr11P... Banana nucleus 50.12 50.25
Os06t0726800-01 Rice nucleus 51.1 49.88
KXG20945 Sorghum nucleus 51.59 49.76
GSMUA_Achr8P13320_001 Banana nucleus 50.86 49.52
Zm00001d036360_P002 Maize nucleus 51.1 49.29
HORVU0Hr1G022770.1 Barley nucleus, plastid 33.25 48.92
TraesCS7B01G472800.1 Wheat nucleus 49.39 48.21
GSMUA_Achr5P19110_001 Banana nucleus 49.88 48.11
HORVU7Hr1G121820.6 Barley nucleus 49.39 48.1
Os04t0563700-01 Rice mitochondrion 49.14 47.86
TraesCS7D01G536000.1 Wheat nucleus 48.9 47.73
TraesCS2B01G422800.1 Wheat nucleus 47.68 47.68
TraesCS2A01G404800.1 Wheat nucleus 46.94 47.41
TraesCS7A01G549500.1 Wheat nucleus 48.41 47.26
Zm00001d026129_P001 Maize nucleus 48.66 46.71
TraesCS2D01G401700.1 Wheat nucleus, plastid 47.68 46.32
EES12664 Sorghum nucleus 48.9 46.3
Zm00001d002662_P010 Maize nucleus 47.68 42.86
HORVU2Hr1G096070.2 Barley nucleus 46.45 40.34
CDY62475 Canola nucleus 33.25 38.75
CDY69551 Canola nucleus 33.01 38.03
CDY06752 Canola nucleus 24.94 35.79
CDX80988 Canola plastid 36.43 34.81
CDY11354 Canola plastid 36.67 34.64
CDX69311 Canola nucleus 34.47 33.65
CDX75659 Canola nucleus 34.96 33.41
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 52.08 31.89
CDY17091 Canola nucleus 27.87 31.84
CDY17039 Canola nucleus 28.12 31.68
CDY47596 Canola nucleus 28.12 31.68
CDY06757 Canola nucleus, plastid 27.87 31.41
CDY23653 Canola nucleus 27.38 31.37
CDY17037 Canola nucleus, plastid 27.87 31.32
CDY66770 Canola nucleus 27.63 31.22
CDY22369 Canola nucleus 26.65 31.05
CDY47595 Canola nucleus, plastid 27.87 30.73
CDX88368 Canola plastid 28.36 30.53
CDX87520 Canola nucleus 28.12 29.79
CDY41784 Canola plastid 24.69 29.71
CDY62408 Canola nucleus, plasma membrane, plastid 15.16 29.38
CDY53304 Canola plastid 29.34 29.34
CDY61993 Canola nucleus 26.65 28.91
CDY48212 Canola nucleus 26.41 28.65
CDX85466 Canola plastid 28.85 27.96
CDX97090 Canola nucleus 29.58 27.75
CDX81722 Canola nucleus, plastid 27.14 27.54
CDY02719 Canola plastid 28.85 27.51
CDX69768 Canola nucleus, plastid 29.34 27.46
CDY36574 Canola mitochondrion, nucleus 29.1 27.29
CDX79389 Canola plastid 28.61 27.02
CDX67944 Canola plastid 28.36 26.85
CDX96836 Canola nucleus, plastid 28.85 26.82
CDX92090 Canola mitochondrion, nucleus 23.23 26.61
CDY66415 Canola nucleus 28.12 26.5
CDX87087 Canola plastid 26.89 26.38
CDY38664 Canola nucleus, plastid 28.61 25.71
CDY65994 Canola plastid 27.38 25.28
CDY39984 Canola plastid 27.63 25.22
CDY37592 Canola mitochondrion, plastid 27.87 24.95
CDY25649 Canola plastid 26.65 24.94
CDY33338 Canola nucleus 34.72 24.32
CDX87305 Canola plastid 27.38 24.24
CDY14091 Canola plastid 36.92 23.02
CDY35083 Canola cytosol, endoplasmic reticulum, nucleus 33.99 22.82
CDX96819 Canola nucleus 33.99 21.55
CDX83953 Canola nucleus 34.23 21.37
CDY04980 Canola nucleus 36.67 20.89
CDY19803 Canola golgi, nucleus, plasma membrane, plastid 27.14 11.22
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2GO:A0A078GYN2UniProt:A0A078GYN2EnsemblPlants:CDY30357ProteinID:CDY30357
ProteinID:CDY30357.1InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634EnsemblPlantsGene:GSBRNA2T00045041001PFAM:PF00134PFAM:PF02984
PIRSF:PIRSF001771ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF336SMART:SM00385SMART:SM01332
SUPFAM:SSF47954UniParc:UPI0004EF1D28SEG:seg:::
Description
BnaA09g09200DBnaA09g09200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYN2]
Coordinates
chrLK032252:-:426838..428771
Molecular Weight (calculated)
46919.5 Da
IEP (calculated)
4.722
GRAVY (calculated)
-0.229
Length
409 amino acids
Sequence
(BLAST)
001: MVNSCENNIV VEATTTSILQ DETTSRKFGQ EMKREKRRVL GVINQNVVGA RGVVNKRGNL SKSRVEEPLY HQEDAKKLKT SVPSENYFGD SIFIDDEEEE
101: EEATLDHTMP MSLEKPYTEA DPMEEVEMED VIVEEEPILD IDLSDAKNSL AAVEYVQDLY SFYRTMERFS CVPVDYMMQQ MDLNEKMRAI LIDWLIEVHD
201: KFDLMKETLF LTVNLIDRFL SKKAVMRKKL QLVGLVALLL ACKYEEVSVP VVEDLVLISD KAYTRNDVLD MEKTMLSTLQ FNVSLPTQYP FLKRFLKAAQ
301: ADKKCEMLAS FLIELALVEY EMLQFQPSLL AATAVYTAQC TVGGFRQWSS TCEFHSHYSE DQLIECCRKM VSLHQRAPTG KLTGVYRKYN TSKFGYIAKC
401: EAAHFLVSA
Best Arabidopsis Sequence Match ( AT2G17620.1 )
(BLAST)
001: MVNSCENKIF VKPTSTTILQ DETRSRKFGQ EMKREKRRVL RVINQNLAGA RVYPCVVNKR GSLLSNKQEE EEGCQKKKFD SLRPSVTRSG VEEETNKKLK
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS
Arabidopsis Description
CYCB2-1Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.