Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68497 | |
| CDX74179 | |
| CDX77145 | |
| CDX79470 | nucleus |
| CDX79500 | |
| CDX83047 | |
| CDX83163 | |
| CDX84726 | nucleus |
| CDX87018 | |
| CDX90850 | |
| CDX94540 | |
| CDY04295 | |
| CDY05870 | |
| CDY08267 | |
| CDY09484 | |
| CDY12181 | nucleus |
| CDY16684 | |
| CDY19160 | nucleus |
| CDY21118 | |
| CDY21291 | |
| CDY23793 | nucleus |
| CDY26081 | |
| CDY28657 | |
| CDY30010 | |
| CDY30517 | |
| CDY32273 | |
| CDY33397 | |
| CDY34039 | |
| CDY40519 | |
| CDY40664 | |
| CDY41887 | |
| CDY42075 | |
| CDY46075 | nucleus |
| CDY50744 | |
| CDY50846 | |
| CDY53532 | |
| CDY53643 | |
| CDY59640 | nucleus |
| CDY60513 | |
| CDY63966 | nucleus |
| CDY66197 | |
| CDY67496 | |
| CDY68615 | |
| CDY70356 | |
| CDY71809 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033658.1-P | Field mustard | nucleus | 99.15 | 97.75 |
| AT5G43080.1 | Thale cress | nucleus | 84.33 | 83.38 |
| CDY06752 | Canola | nucleus | 59.83 | 73.68 |
| CDY23653 | Canola | nucleus | 71.23 | 70.03 |
| CDY66770 | Canola | nucleus | 72.08 | 69.89 |
| CDY47596 | Canola | nucleus | 71.79 | 69.42 |
| CDY17091 | Canola | nucleus | 70.09 | 68.72 |
| CDY06757 | Canola | nucleus, plastid | 70.66 | 68.32 |
| CDY17039 | Canola | nucleus | 70.66 | 68.32 |
| CDY17037 | Canola | nucleus, plastid | 69.52 | 67.03 |
| CDY47595 | Canola | nucleus, plastid | 70.09 | 66.31 |
| KRH52056 | Soybean | nucleus | 38.46 | 63.98 |
| OQU91386 | Sorghum | nucleus | 45.58 | 61.3 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 63.25 | 60.82 |
| Solyc12g088530.1.1 | Tomato | nucleus | 59.83 | 59.32 |
| PGSC0003DMT400055428 | Potato | nucleus | 61.82 | 58.97 |
| Solyc04g078310.2.1 | Tomato | nucleus | 61.82 | 58.49 |
| PGSC0003DMT400030222 | Potato | nucleus | 58.97 | 58.47 |
| PGSC0003DMT400030176 | Potato | nucleus | 58.97 | 58.15 |
| KRH61375 | Soybean | nucleus | 53.56 | 57.49 |
| GSMUA_Achr10P... | Banana | nucleus | 51.57 | 57.1 |
| KRH15427 | Soybean | nucleus, plastid | 58.97 | 56.87 |
| Solyc12g088500.1.1 | Tomato | nucleus | 56.98 | 56.5 |
| Solyc12g088470.1.1 | Tomato | nucleus | 57.83 | 56.39 |
| Solyc12g088520.1.1 | Tomato | nucleus | 56.98 | 56.34 |
| KRH05614 | Soybean | nucleus | 58.69 | 56.13 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 58.4 | 55.41 |
| KRH61369 | Soybean | nucleus | 51.0 | 54.74 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 57.55 | 54.16 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 56.7 | 53.64 |
| KRH52055 | Soybean | nucleus | 54.7 | 53.63 |
| TraesCS4A01G236700.2 | Wheat | plastid | 57.27 | 53.6 |
| KRH61371 | Soybean | nucleus | 52.99 | 53.3 |
| KRH61373 | Soybean | nucleus, plastid | 55.84 | 52.27 |
| Zm00001d033365_P002 | Maize | nucleus | 55.27 | 52.15 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 57.55 | 51.66 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 41.88 | 51.4 |
| Zm00001d013744_P001 | Maize | nucleus | 50.43 | 49.58 |
| TraesCS5B01G078200.1 | Wheat | plastid | 52.99 | 49.34 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 50.43 | 49.17 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 52.42 | 48.68 |
| TraesCS5A01G072000.1 | Wheat | plastid | 52.14 | 48.67 |
| Os12t0581800-01 | Rice | nucleus, plastid | 52.42 | 47.79 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 31.91 | 45.9 |
| Zm00001d030849_P001 | Maize | nucleus | 54.99 | 45.63 |
| EES16237 | Sorghum | nucleus, plastid | 55.27 | 45.33 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 26.78 | 44.55 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 52.99 | 42.56 |
| CDY48212 | Canola | nucleus | 43.3 | 40.32 |
| CDY61993 | Canola | nucleus | 43.3 | 40.32 |
| EER95303 | Sorghum | nucleus, plastid | 43.59 | 40.16 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 51.85 | 40.09 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.73 | 39.89 |
| CDY53304 | Canola | plastid | 45.87 | 39.36 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 42.45 | 39.21 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 37.89 | 38.78 |
| CDX88368 | Canola | plastid | 41.88 | 38.68 |
| CDX81722 | Canola | nucleus, plastid | 44.16 | 38.46 |
| CDY41784 | Canola | plastid | 37.04 | 38.24 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.31 | 38.16 |
| CDX92090 | Canola | mitochondrion, nucleus | 38.75 | 38.1 |
| CDX87520 | Canola | nucleus | 41.6 | 37.82 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 36.47 | 37.54 |
| CDX87087 | Canola | plastid | 44.16 | 37.17 |
| CDY36574 | Canola | mitochondrion, nucleus | 45.58 | 36.7 |
| CDX96836 | Canola | nucleus, plastid | 45.87 | 36.59 |
| CDY31481 | Canola | nucleus | 22.51 | 36.41 |
| CDY66415 | Canola | nucleus | 45.01 | 36.41 |
| CDX79389 | Canola | plastid | 44.73 | 36.26 |
| CDX67944 | Canola | plastid | 44.44 | 36.11 |
| CDX85466 | Canola | plastid | 42.73 | 35.55 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 41.31 | 34.94 |
| CDY02719 | Canola | plastid | 42.45 | 34.73 |
| CDX97090 | Canola | nucleus | 43.02 | 34.63 |
| CDY37592 | Canola | mitochondrion, plastid | 44.73 | 34.35 |
| CDX69768 | Canola | nucleus, plastid | 42.73 | 34.32 |
| CDY38664 | Canola | nucleus, plastid | 44.44 | 34.29 |
| CDY39984 | Canola | plastid | 43.59 | 34.15 |
| CDX87305 | Canola | plastid | 44.73 | 33.98 |
| CDY65994 | Canola | plastid | 41.88 | 33.18 |
| CDY25649 | Canola | plastid | 41.31 | 33.18 |
| Os03t0607600-00 | Rice | nucleus | 53.28 | 30.76 |
| CDY62475 | Canola | nucleus | 29.63 | 29.63 |
| Zm00001d048127_P001 | Maize | plastid | 40.17 | 29.44 |
| CDY69551 | Canola | nucleus | 29.63 | 29.3 |
| CDX72551 | Canola | nucleus | 32.19 | 28.18 |
| CDY11354 | Canola | plastid | 34.47 | 27.94 |
| Os03t0208700-00 | Rice | nucleus | 32.48 | 27.87 |
| CDY67210 | Canola | nucleus | 32.19 | 27.83 |
| CDX80988 | Canola | plastid | 33.9 | 27.8 |
| CDY29184 | Canola | nucleus | 31.91 | 26.73 |
| CDY30357 | Canola | nucleus | 31.05 | 26.65 |
| CDY26816 | Canola | nucleus | 30.77 | 26.54 |
| CDY07838 | Canola | nucleus | 31.05 | 26.08 |
| CDY33634 | Canola | nucleus | 29.91 | 25.74 |
| CDX69311 | Canola | nucleus | 30.48 | 25.54 |
| CDX85942 | Canola | nucleus | 29.63 | 25.49 |
| CDX96631 | Canola | nucleus | 29.63 | 25.37 |
| CDY29520 | Canola | nucleus | 29.34 | 25.12 |
| CDX75659 | Canola | nucleus | 30.2 | 24.77 |
| CDX88261 | Canola | nucleus | 29.91 | 24.42 |
| CDX87612 | Canola | nucleus | 29.91 | 24.36 |
| CDX68105 | Canola | nucleus | 26.78 | 23.8 |
| CDY14091 | Canola | plastid | 33.05 | 17.68 |
| CDY33338 | Canola | nucleus | 27.92 | 16.78 |
| CDY04980 | Canola | nucleus | 33.33 | 16.3 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 27.64 | 15.93 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 43.59 | 15.47 |
| CDX96819 | Canola | nucleus | 28.21 | 15.35 |
| CDX83953 | Canola | nucleus | 28.21 | 15.11 |
| Os03t0208800-00 | Rice | nucleus | 14.53 | 12.85 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078GAG2 | UniProt:A0A078GAG2 | InterPro:BAH_dom | EnsemblPlants:CDY22369 |
| ProteinID:CDY22369 | ProteinID:CDY22369.1 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00018851001 | InterPro:IPR001025 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PFscan:PS51038 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EF31A0 | SEG:seg | : | : |
Description
BnaA06g36910DPutative cyclin-A3-1 [Source:Projected from Arabidopsis thaliana (AT5G43080) UniProtKB/Swiss-Prot;Acc:Q9FMH5]
Coordinates
chrLK032130:-:346787..348538
Molecular Weight (calculated)
40768.7 Da
IEP (calculated)
9.402
GRAVY (calculated)
-0.371
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDKENFVR MTRAATKRKA AMADEDRLSK KKKKRVVLGE LPNLCNKRKQ TRKPLRVPKK QNKKTSKSDV DTRSDDPQMC APYVTGIFVY LRQLEEKSRP
101: LIDYIEKVQK DVTPNMRGVL VDWLVEVAEE YKLLSDTLYL AVSYIDRFLS LRTVNRQKLQ LLGVSAMLIA SKYEEITPPN VEDFCYITDN TYTKQEIVKM
201: EADVLLALQF ELGNPTTNTF LRRFTRVAQE DFNMSHLQME FLCSYLSELS MLDYNSLKFL PSVVAASAVY LARFIIRPKQ HPWSVMLEEY TRYKAGDLRE
301: CVCMIHDLYL SRKGGALQAV REKYKQHKFK CVATMPVSPE LPLTFFEDVS I
101: LIDYIEKVQK DVTPNMRGVL VDWLVEVAEE YKLLSDTLYL AVSYIDRFLS LRTVNRQKLQ LLGVSAMLIA SKYEEITPPN VEDFCYITDN TYTKQEIVKM
201: EADVLLALQF ELGNPTTNTF LRRFTRVAQE DFNMSHLQME FLCSYLSELS MLDYNSLKFL PSVVAASAVY LARFIIRPKQ HPWSVMLEEY TRYKAGDLRE
301: CVCMIHDLYL SRKGGALQAV REKYKQHKFK CVATMPVSPE LPLTFFEDVS I
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.