Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05614 | Soybean | nucleus | 90.66 | 89.92 |
| CDY06752 | Canola | nucleus | 50.27 | 64.21 |
| OQU91386 | Sorghum | nucleus | 44.78 | 62.45 |
| KRH52056 | Soybean | nucleus | 35.99 | 62.09 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 60.99 | 60.82 |
| PGSC0003DMT400030222 | Potato | nucleus | 57.69 | 59.32 |
| Solyc12g088530.1.1 | Tomato | nucleus | 57.69 | 59.32 |
| CDY22369 | Canola | nucleus | 56.87 | 58.97 |
| Solyc04g078310.2.1 | Tomato | nucleus | 59.89 | 58.76 |
| PGSC0003DMT400030176 | Potato | nucleus | 57.42 | 58.71 |
| PGSC0003DMT400055428 | Potato | nucleus | 59.34 | 58.7 |
| Bra033658.1-P | Field mustard | nucleus | 57.14 | 58.43 |
| Solyc12g088520.1.1 | Tomato | nucleus | 56.04 | 57.46 |
| AT5G43080.1 | Thale cress | nucleus | 56.04 | 57.46 |
| Solyc12g088500.1.1 | Tomato | nucleus | 55.49 | 57.06 |
| Solyc12g088470.1.1 | Tomato | nucleus | 56.32 | 56.94 |
| KRH61375 | Soybean | nucleus | 51.1 | 56.88 |
| CDY17091 | Canola | nucleus | 55.77 | 56.7 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 57.14 | 56.22 |
| CDY47596 | Canola | nucleus | 55.49 | 55.65 |
| GSMUA_Achr10P... | Banana | nucleus | 48.35 | 55.52 |
| Bra040793.1-P | Field mustard | nucleus | 55.22 | 55.37 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 55.22 | 55.37 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 55.22 | 55.22 |
| CDY17037 | Canola | nucleus, plastid | 55.22 | 55.22 |
| Bra032220.1-P | Field mustard | nucleus | 54.12 | 55.18 |
| CDY06757 | Canola | nucleus, plastid | 54.95 | 55.1 |
| CDY17039 | Canola | nucleus | 54.95 | 55.1 |
| CDY66770 | Canola | nucleus | 54.67 | 54.97 |
| CDY23653 | Canola | nucleus | 53.85 | 54.9 |
| AT1G47210.2 | Thale cress | nucleus | 56.04 | 54.84 |
| CDY47595 | Canola | nucleus, plastid | 55.77 | 54.72 |
| Bra040710.1-P | Field mustard | nucleus | 55.49 | 54.45 |
| KRH61371 | Soybean | nucleus | 51.65 | 53.87 |
| KRH61369 | Soybean | nucleus | 47.8 | 53.21 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 41.21 | 52.45 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 53.02 | 52.16 |
| KRH52055 | Soybean | nucleus | 51.1 | 51.96 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 52.75 | 51.75 |
| AT1G47220.1 | Thale cress | nucleus | 46.43 | 51.68 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 52.75 | 51.47 |
| TraesCS5B01G078200.1 | Wheat | plastid | 53.3 | 51.46 |
| Zm00001d033365_P002 | Maize | nucleus | 52.47 | 51.34 |
| TraesCS5A01G072000.1 | Wheat | plastid | 52.75 | 51.06 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 53.02 | 51.06 |
| TraesCS4A01G236700.2 | Wheat | plastid | 52.47 | 50.93 |
| KRH61373 | Soybean | nucleus, plastid | 51.92 | 50.4 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 53.85 | 50.13 |
| Zm00001d013744_P001 | Maize | nucleus | 48.9 | 49.86 |
| Os12t0581800-01 | Rice | nucleus, plastid | 51.65 | 48.83 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 47.8 | 48.33 |
| Zm00001d030849_P001 | Maize | nucleus | 55.22 | 47.52 |
| EES16237 | Sorghum | nucleus, plastid | 55.49 | 47.2 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 31.04 | 46.31 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 54.4 | 45.31 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 52.75 | 42.29 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.86 | 41.49 |
| TraesCS4D01G253900.1 | Wheat | nucleus | 41.48 | 39.74 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 41.21 | 39.47 |
| EER95303 | Sorghum | nucleus, plastid | 41.21 | 39.37 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 35.44 | 37.61 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 34.62 | 36.95 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 41.21 | 36.14 |
| KRH64625 | Soybean | plastid | 47.25 | 35.54 |
| KRH53279 | Soybean | plastid | 46.43 | 35.21 |
| KRH52524 | Soybean | nucleus | 44.23 | 34.33 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 18.68 | 34.17 |
| KRH47513 | Soybean | nucleus | 44.51 | 34.03 |
| KRH61850 | Soybean | nucleus | 45.05 | 33.61 |
| KRH16044 | Soybean | nucleus | 42.31 | 33.41 |
| KRH16410 | Soybean | plastid | 45.88 | 33.13 |
| KRH44391 | Soybean | nucleus | 42.03 | 32.48 |
| KRH17986 | Soybean | plastid | 44.51 | 32.21 |
| KRH05060 | Soybean | nucleus | 40.11 | 31.81 |
| Os03t0607600-00 | Rice | nucleus | 49.18 | 29.44 |
| Zm00001d048127_P001 | Maize | plastid | 38.74 | 29.44 |
| Os03t0208700-00 | Rice | nucleus | 32.69 | 29.1 |
| KRH60628 | Soybean | nucleus | 28.85 | 25.93 |
| KRH51329 | Soybean | nucleus, plastid | 29.4 | 25.78 |
| KRH14611 | Soybean | nucleus | 31.04 | 25.74 |
| KRH73516 | Soybean | nucleus | 30.49 | 25.23 |
| KRH66715 | Soybean | nucleus | 26.92 | 25.0 |
| KRH76553 | Soybean | nucleus | 28.57 | 24.07 |
| KRG95055 | Soybean | nucleus | 29.67 | 23.74 |
| KRH66713 | Soybean | nucleus | 29.4 | 23.57 |
| KRH66718 | Soybean | plastid | 23.9 | 23.32 |
| KRH28901 | Soybean | nucleus | 27.47 | 23.09 |
| KRG95056 | Soybean | cytosol | 23.35 | 21.96 |
| Os03t0208800-00 | Rice | nucleus | 16.21 | 14.86 |
| KRH44849 | Soybean | nucleus | 26.92 | 13.23 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100791691 | MapMan:13.1.1.1.1 | EMBL:ACUP02008592 | InterPro:Cyclin-A_plant | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_14G087100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | UniProt:I1M8R8 | EnsemblPlants:KRH15427 | ProteinID:KRH15427 | ProteinID:KRH15427.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF270 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000233B6E9 | : | : |
Description
hypothetical protein
Coordinates
chr14:-:7788248..7791214
Molecular Weight (calculated)
41661.4 Da
IEP (calculated)
8.944
GRAVY (calculated)
-0.282
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSENNNAR PQRVAKKRAA AAICELHRNA AKRKRVVLGD LTNVSSNYVA VTEKEIQKQK KVKREQPARP VSTPEKVEER HDPQLCGPYV SDIYEYLRGM
101: EVDPSKRPLP DYVQKVQRDV NANMRGVLVD WLVEVAEEYK LVSDTLYFCV AYIDRFLSLN ALSRQKLQLL GVASMLIASK YEEIKPPDVE DFCYITDNTY
201: SKEEVVNMEA DILKALKFEL GGPTVKTFLR RFSRVAQEGV DTSDLQFEFL SCYLAELSLL DYNCIKFLPS LVAASVVFLA RFMFSTKTHP WNLALHQLTR
301: YKPADLKECV LNLHDLYLSR RGASLQAVRE KYKQHKFKCV ATTASPPKIP LSFFEFGGQI LWQL
101: EVDPSKRPLP DYVQKVQRDV NANMRGVLVD WLVEVAEEYK LVSDTLYFCV AYIDRFLSLN ALSRQKLQLL GVASMLIASK YEEIKPPDVE DFCYITDNTY
201: SKEEVVNMEA DILKALKFEL GGPTVKTFLR RFSRVAQEGV DTSDLQFEFL SCYLAELSLL DYNCIKFLPS LVAASVVFLA RFMFSTKTHP WNLALHQLTR
301: YKPADLKECV LNLHDLYLSR RGASLQAVRE KYKQHKFKCV ATTASPPKIP LSFFEFGGQI LWQL
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.