Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91386 | Sorghum | nucleus | 57.41 | 69.73 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 81.07 | 65.73 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 58.04 | 64.34 |
| KRH52056 | Soybean | nucleus | 42.27 | 63.51 |
| CDY06752 | Canola | nucleus | 53.63 | 59.65 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 66.88 | 57.3 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 66.25 | 56.3 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 65.62 | 56.06 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 63.41 | 55.83 |
| TraesCS4A01G236700.2 | Wheat | plastid | 65.62 | 55.47 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 62.78 | 54.52 |
| Zm00001d033365_P002 | Maize | nucleus | 63.72 | 54.3 |
| Zm00001d013744_P001 | Maize | nucleus | 60.57 | 53.78 |
| PGSC0003DMT400030222 | Potato | nucleus | 59.31 | 53.11 |
| Solyc04g078310.2.1 | Tomato | nucleus | 61.83 | 52.83 |
| PGSC0003DMT400055428 | Potato | nucleus | 60.88 | 52.45 |
| Solyc12g088500.1.1 | Tomato | nucleus | 58.36 | 52.26 |
| TraesCS5B01G078200.1 | Wheat | plastid | 62.15 | 52.25 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 62.15 | 52.12 |
| Solyc12g088530.1.1 | Tomato | nucleus | 58.04 | 51.98 |
| PGSC0003DMT400030176 | Potato | nucleus | 58.36 | 51.97 |
| TraesCS5A01G072000.1 | Wheat | plastid | 61.2 | 51.6 |
| CDY22369 | Canola | nucleus | 57.1 | 51.57 |
| Os12t0581800-01 | Rice | nucleus, plastid | 62.46 | 51.43 |
| AT5G43080.1 | Thale cress | nucleus | 57.41 | 51.27 |
| Solyc12g088520.1.1 | Tomato | nucleus | 57.41 | 51.27 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 39.75 | 51.01 |
| Solyc12g088470.1.1 | Tomato | nucleus | 57.73 | 50.83 |
| Bra033658.1-P | Field mustard | nucleus | 56.78 | 50.56 |
| Bra032220.1-P | Field mustard | nucleus | 56.15 | 49.86 |
| AT1G47220.1 | Thale cress | nucleus | 51.42 | 49.85 |
| CDY66770 | Canola | nucleus | 56.78 | 49.72 |
| CDY23653 | Canola | nucleus | 55.84 | 49.58 |
| KRH61375 | Soybean | nucleus | 51.1 | 49.54 |
| CDY17091 | Canola | nucleus | 55.84 | 49.44 |
| Bra040793.1-P | Field mustard | nucleus | 56.15 | 49.04 |
| CDY47596 | Canola | nucleus | 56.15 | 49.04 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 57.1 | 48.92 |
| CDY17037 | Canola | nucleus, plastid | 56.15 | 48.9 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 55.84 | 48.76 |
| CDY17039 | Canola | nucleus | 55.84 | 48.76 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 55.84 | 48.63 |
| CDY06757 | Canola | nucleus, plastid | 55.52 | 48.48 |
| KRH15427 | Soybean | nucleus, plastid | 55.52 | 48.35 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 51.73 | 48.09 |
| CDY47595 | Canola | nucleus, plastid | 56.15 | 47.98 |
| KRH52055 | Soybean | nucleus | 53.94 | 47.77 |
| Bra040710.1-P | Field mustard | nucleus | 55.84 | 47.71 |
| KRH05614 | Soybean | nucleus | 55.2 | 47.68 |
| EES16237 | Sorghum | nucleus, plastid | 64.04 | 47.43 |
| Zm00001d030849_P001 | Maize | nucleus | 62.78 | 47.04 |
| AT1G47210.2 | Thale cress | nucleus | 55.2 | 47.04 |
| KRH61371 | Soybean | nucleus | 51.73 | 46.99 |
| KRH61369 | Soybean | nucleus | 48.27 | 46.79 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 62.46 | 45.31 |
| KRH61373 | Soybean | nucleus, plastid | 53.31 | 45.07 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 62.46 | 43.61 |
| PGSC0003DMT400056625 | Potato | nucleus | 49.84 | 41.58 |
| Solyc10g049360.1.1 | Tomato | nucleus | 49.53 | 41.53 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 22.71 | 33.18 |
| Os03t0607600-00 | Rice | nucleus | 62.78 | 32.73 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 48.27 | 30.48 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 47.95 | 30.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.08 | 29.87 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 47.63 | 27.86 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 32.81 | 25.87 |
| GSMUA_Achr11P... | Banana | nucleus | 30.91 | 24.02 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 32.18 | 24.0 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 31.55 | 23.81 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 31.23 | 23.35 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 31.86 | 23.22 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 32.81 | 22.76 |
| GSMUA_Achr10P... | Banana | nucleus | 31.86 | 22.3 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 33.75 | 16.02 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr10G18120_001 | EnsemblPlants:GSMUA_Achr10P18120_001 |
| EnsemblPlants:GSMUA_Achr10T18120_001 | UniProt:M0RJ87 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002959ABF |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-A3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18120_001]
Coordinates
chr10:+:25004333..25007485
Molecular Weight (calculated)
36077.2 Da
IEP (calculated)
4.847
GRAVY (calculated)
-0.227
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCEFLACRG SKPKKKVEEA DDEKVDLVEV AAPSDDDPQM CAHCASDIYQ YLNSMEADAK RRPSPNYMET VQSDVTANMR AILVDWLVEV AEEYKLVSDT
101: LFLTVSYIDR FLSFNAINRH RLQLLGVSSM LIASKYEEIS PPNAEDFCYI TDNTYTKQEV VKMESDILKF LKFEMGNPTI KTFVRRFTQV GQEDGKYPNL
201: QLEYLGSYLA ELSLLDYGCV KFLPSVVAAA AVFVARFTID PKSHPWNKKL EECTGYKVSD LKYCICAILD LQLSKKAASL VAIRDKYKQH RFECVSSLVP
301: PSEIPATYFD EPKEYLP
101: LFLTVSYIDR FLSFNAINRH RLQLLGVSSM LIASKYEEIS PPNAEDFCYI TDNTYTKQEV VKMESDILKF LKFEMGNPTI KTFVRRFTQV GQEDGKYPNL
201: QLEYLGSYLA ELSLLDYGCV KFLPSVVAAA AVFVARFTID PKSHPWNKKL EECTGYKVSD LKYCICAILD LQLSKKAASL VAIRDKYKQH RFECVSSLVP
301: PSEIPATYFD EPKEYLP
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.