Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91386 | Sorghum | nucleus | 63.03 | 86.21 |
| Zm00001d033365_P002 | Maize | nucleus | 79.83 | 76.61 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 70.03 | 67.02 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 69.19 | 66.76 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 68.91 | 66.31 |
| TraesCS4A01G236700.2 | Wheat | plastid | 69.19 | 65.87 |
| GSMUA_Achr10P... | Banana | nucleus | 53.78 | 60.57 |
| KRH52056 | Soybean | nucleus | 34.73 | 58.77 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 55.18 | 53.97 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 58.54 | 53.45 |
| CDY06752 | Canola | nucleus | 42.3 | 52.98 |
| Zm00001d030849_P001 | Maize | nucleus | 61.06 | 51.54 |
| PGSC0003DMT400030222 | Potato | nucleus | 50.42 | 50.85 |
| PGSC0003DMT400030176 | Potato | nucleus | 50.7 | 50.84 |
| PGSC0003DMT400055428 | Potato | nucleus | 52.38 | 50.82 |
| Solyc04g078310.2.1 | Tomato | nucleus | 52.66 | 50.67 |
| CDY22369 | Canola | nucleus | 49.58 | 50.43 |
| Solyc12g088500.1.1 | Tomato | nucleus | 49.86 | 50.28 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 61.34 | 50.11 |
| Solyc12g088530.1.1 | Tomato | nucleus | 49.58 | 50.0 |
| Solyc12g088520.1.1 | Tomato | nucleus | 49.3 | 49.58 |
| Bra033658.1-P | Field mustard | nucleus | 49.3 | 49.44 |
| KRH15427 | Soybean | nucleus, plastid | 49.86 | 48.9 |
| Solyc12g088470.1.1 | Tomato | nucleus | 49.3 | 48.89 |
| AT5G43080.1 | Thale cress | nucleus | 48.18 | 48.45 |
| KRH61375 | Soybean | nucleus | 44.26 | 48.32 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 45.66 | 47.8 |
| KRH61369 | Soybean | nucleus | 43.42 | 47.4 |
| CDY17091 | Canola | nucleus | 47.34 | 47.21 |
| KRH05614 | Soybean | nucleus | 48.46 | 47.14 |
| KRH52055 | Soybean | nucleus | 47.06 | 46.93 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 48.46 | 46.76 |
| CDY66770 | Canola | nucleus | 46.78 | 46.13 |
| CDY47595 | Canola | nucleus, plastid | 47.9 | 46.09 |
| CDY17037 | Canola | nucleus, plastid | 46.78 | 45.88 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 46.5 | 45.6 |
| AT1G47220.1 | Thale cress | nucleus | 41.74 | 45.57 |
| Bra032220.1-P | Field mustard | nucleus | 45.38 | 45.38 |
| Bra040710.1-P | Field mustard | nucleus | 47.06 | 45.28 |
| KRH61371 | Soybean | nucleus | 44.26 | 45.27 |
| CDY06757 | Canola | nucleus, plastid | 45.94 | 45.18 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 45.94 | 45.18 |
| CDY23653 | Canola | nucleus | 45.1 | 45.1 |
| CDY47596 | Canola | nucleus | 45.38 | 44.63 |
| Bra040793.1-P | Field mustard | nucleus | 45.38 | 44.63 |
| CDY17039 | Canola | nucleus | 45.1 | 44.35 |
| AT1G47210.2 | Thale cress | nucleus | 45.66 | 43.82 |
| PGSC0003DMT400056625 | Potato | nucleus | 45.38 | 42.63 |
| Solyc10g049360.1.1 | Tomato | nucleus | 45.1 | 42.59 |
| KRH61373 | Soybean | nucleus, plastid | 44.54 | 42.4 |
| Zm00001d032128_P001 | Maize | cytosol | 17.37 | 39.24 |
| Os03t0607600-00 | Rice | nucleus | 62.47 | 36.68 |
| Zm00001d019469_P001 | Maize | extracellular | 13.17 | 32.87 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 17.09 | 30.5 |
| Zm00001d040381_P001 | Maize | plastid | 43.98 | 29.46 |
| Zm00001d048127_P001 | Maize | plastid | 36.69 | 27.35 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 39.78 | 27.26 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 38.38 | 26.86 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 35.85 | 26.39 |
| Zm00001d010404_P001 | Maize | nucleus | 35.01 | 25.77 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 29.97 | 23.83 |
| Zm00001d036360_P002 | Maize | nucleus | 27.45 | 23.11 |
| Zm00001d043164_P002 | Maize | nucleus | 29.13 | 21.49 |
| Zm00001d026129_P001 | Maize | nucleus | 25.21 | 21.13 |
| Zm00001d010656_P001 | Maize | nucleus | 26.33 | 21.08 |
| Zm00001d002662_P010 | Maize | nucleus | 25.49 | 20.0 |
| Zm00001d008221_P001 | Maize | nucleus | 26.61 | 19.83 |
| Zm00001d020033_P001 | Maize | nucleus | 26.05 | 17.1 |
| Zm00001d020996_P001 | Maize | nucleus | 25.49 | 16.73 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100216646 | MapMan:13.1.1.1.1 | ProteinID:AQK64281.1 | UniProt:B4FJ13 | EMBL:BT037101 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF345 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00017B71F3 |
| EnsemblPlantsGene:Zm00001d013744 | EnsemblPlants:Zm00001d013744_P001 | EnsemblPlants:Zm00001d013744_T001 | SEG:seg | : | : |
Description
Putative cyclin-A3-1
Coordinates
chr5:-:19094397..19096516
Molecular Weight (calculated)
40264.5 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.285
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MADMQNYAAP PLLTHATAKR KRVALNQLPT LPNAVLGAHD EGGGGDDKPV KKQHLLPAAK PEPNAAPAPA AAASDVEEDP QLRKPYASDI YSYLRSTESQ
101: ATRRPATDYI AAVQVDVTPN TRAILVDWLV DVSEEYRFVS DTLYLTVSYI DRFLSANALN RQKLQLLGVA AMLIASKHEE ISPLNVEDFC YITDNTYTKQ
201: EVVKMESDIL NVLKFEMGNP TPKTFLRMFT RFSKEDTKKY RSLQLEFLGS YLCELSLLDY SLLRFLPSLV AASVLFVARL TLDPHTHPWS KKMQTLTGYK
301: PFELKDCVAA IHHLQLNRKY SSMMATRDKF KERRFKGVSA LLPPVEIPAS YFEKLKE
101: ATRRPATDYI AAVQVDVTPN TRAILVDWLV DVSEEYRFVS DTLYLTVSYI DRFLSANALN RQKLQLLGVA AMLIASKHEE ISPLNVEDFC YITDNTYTKQ
201: EVVKMESDIL NVLKFEMGNP TPKTFLRMFT RFSKEDTKKY RSLQLEFLGS YLCELSLLDY SLLRFLPSLV AASVLFVARL TLDPHTHPWS KKMQTLTGYK
301: PFELKDCVAA IHHLQLNRKY SSMMATRDKF KERRFKGVSA LLPPVEIPAS YFEKLKE
001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA
Arabidopsis Description
CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.