Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G076900.1 | Wheat | nucleus | 96.77 | 97.03 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 96.23 | 95.71 |
| TraesCS4A01G236700.2 | Wheat | plastid | 96.5 | 95.47 |
| OQU91386 | Sorghum | nucleus | 55.53 | 78.93 |
| Zm00001d033365_P002 | Maize | nucleus | 74.39 | 74.19 |
| Zm00001d013744_P001 | Maize | nucleus | 66.31 | 68.91 |
| TraesCS5B01G078200.1 | Wheat | plastid | 67.12 | 66.05 |
| GSMUA_Achr10P... | Banana | nucleus | 56.06 | 65.62 |
| GSMUA_Achr6P11130_001 | Banana | nucleus | 65.77 | 62.4 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 59.84 | 60.82 |
| KRH52056 | Soybean | nucleus | 34.5 | 60.66 |
| PGSC0003DMT400030222 | Potato | nucleus | 55.8 | 58.47 |
| PGSC0003DMT400030176 | Potato | nucleus | 56.06 | 58.43 |
| CDY06752 | Canola | nucleus | 44.74 | 58.25 |
| PGSC0003DMT400055428 | Potato | nucleus | 57.68 | 58.15 |
| Solyc04g078310.2.1 | Tomato | nucleus | 57.68 | 57.68 |
| Solyc12g088500.1.1 | Tomato | nucleus | 54.72 | 57.34 |
| CDY22369 | Canola | nucleus | 53.64 | 56.7 |
| Solyc12g088470.1.1 | Tomato | nucleus | 54.72 | 56.39 |
| Solyc12g088520.1.1 | Tomato | nucleus | 53.64 | 56.06 |
| Bra033658.1-P | Field mustard | nucleus | 53.64 | 55.9 |
| Solyc12g088530.1.1 | Tomato | nucleus | 53.1 | 55.65 |
| AT5G43080.1 | Thale cress | nucleus | 52.56 | 54.93 |
| CDY66770 | Canola | nucleus | 52.02 | 53.31 |
| CDY17091 | Canola | nucleus | 50.94 | 52.79 |
| CDY17037 | Canola | nucleus, plastid | 51.75 | 52.75 |
| KRH15427 | Soybean | nucleus, plastid | 51.75 | 52.75 |
| KRH61369 | Soybean | nucleus | 46.36 | 52.6 |
| Bra032220.1-P | Field mustard | nucleus | 50.4 | 52.38 |
| KRH61375 | Soybean | nucleus | 46.09 | 52.29 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 51.21 | 52.2 |
| CDY23653 | Canola | nucleus | 50.13 | 52.1 |
| KRH61371 | Soybean | nucleus | 48.79 | 51.86 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 51.48 | 51.62 |
| Bra040793.1-P | Field mustard | nucleus | 50.4 | 51.52 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 50.4 | 51.52 |
| CDY47596 | Canola | nucleus | 50.4 | 51.52 |
| CDY06757 | Canola | nucleus, plastid | 50.4 | 51.52 |
| KRH05614 | Soybean | nucleus | 50.94 | 51.5 |
| CDY47595 | Canola | nucleus, plastid | 51.48 | 51.48 |
| KRH52055 | Soybean | nucleus | 49.6 | 51.4 |
| CDY17039 | Canola | nucleus | 50.13 | 51.24 |
| AT1G47220.1 | Thale cress | nucleus | 45.01 | 51.07 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 46.63 | 50.73 |
| Bra040710.1-P | Field mustard | nucleus | 50.67 | 50.67 |
| AT1G47210.2 | Thale cress | nucleus | 50.4 | 50.27 |
| PGSC0003DMT400056625 | Potato | nucleus | 50.4 | 49.21 |
| Solyc10g049360.1.1 | Tomato | nucleus | 49.6 | 48.68 |
| KRH61373 | Soybean | nucleus, plastid | 48.25 | 47.73 |
| Os03t0607600-00 | Rice | nucleus | 69.0 | 42.11 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 42.05 | 41.49 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 38.81 | 40.56 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 35.31 | 38.42 |
| TraesCS3B01G183400.1 | Wheat | plastid | 47.17 | 34.31 |
| TraesCS5B01G114300.2 | Wheat | plastid | 41.51 | 30.37 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 33.15 | 28.21 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 31.81 | 27.06 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 29.92 | 26.49 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 32.34 | 26.03 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 27.22 | 24.69 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G078300.1 | EnsemblPlantsGene:TraesCS4B01G078300 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF345 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4B:+:75519290..75521073
Molecular Weight (calculated)
41145.5 Da
IEP (calculated)
9.723
GRAVY (calculated)
-0.313
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKENSAYA AAAAPRTTRA SAKRAAAVTA VAVAAKRKRV ALSEIPTLPN GAPQPQTKPK KSSSQVAKPK KRSVSSLSLP APKPAPGAAD ETGDPQLCAP
101: YASDIYSYLR SMEVQARRRP AADYIERVQV DVTPNMRGIL VDWLVEVAEE YKLVSDTLYL TVSYIDRFLS ANSLNRQKLQ LLGVSAMLIA SKYEEISPPN
201: VEDFCYITDN TYMKQELVKM ERDILNNLKF EMGNPTAKTF LRMFIKSGQE EKKYPSLLLE FMGSYLTELS LLDYGCVRFL PSAAAASAVF VARLTLNPDS
301: NPWSKKLQSV TGYRASELKD CITAIHDLQL SRKGQSWNAI RDKYKQHRFK GVSALLPPVG IPASYFEDLK E
101: YASDIYSYLR SMEVQARRRP AADYIERVQV DVTPNMRGIL VDWLVEVAEE YKLVSDTLYL TVSYIDRFLS ANSLNRQKLQ LLGVSAMLIA SKYEEISPPN
201: VEDFCYITDN TYMKQELVKM ERDILNNLKF EMGNPTAKTF LRMFIKSGQE EKKYPSLLLE FMGSYLTELS LLDYGCVRFL PSAAAASAVF VARLTLNPDS
301: NPWSKKLQSV TGYRASELKD CITAIHDLQL SRKGQSWNAI RDKYKQHRFK GVSALLPPVG IPASYFEDLK E
001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI
Arabidopsis Description
CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.