Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0237100-01 | Rice | extracellular | 43.38 | 78.17 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 94.93 | 70.65 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 89.58 | 60.57 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 54.37 | 52.16 |
| KXG21616 | Sorghum | nucleus, plastid | 65.35 | 48.43 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 64.51 | 45.8 |
| Bra032202.1-P | Field mustard | plastid | 54.37 | 45.73 |
| TraesCS3B01G183400.1 | Wheat | plastid | 65.63 | 45.69 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 63.66 | 45.02 |
| Bra023606.1-P | Field mustard | plastid | 52.68 | 44.63 |
| CDX85466 | Canola | plastid | 52.68 | 44.31 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 26.2 | 44.08 |
| CDY25649 | Canola | plastid | 54.08 | 43.94 |
| CDY02719 | Canola | plastid | 52.96 | 43.82 |
| CDY65994 | Canola | plastid | 54.37 | 43.57 |
| AT1G44110.1 | Thale cress | plastid | 56.06 | 43.26 |
| KRH53279 | Soybean | plastid | 57.75 | 42.71 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 58.87 | 42.22 |
| KRH64625 | Soybean | plastid | 57.46 | 42.15 |
| Solyc11g005090.1.1 | Tomato | plastid | 56.62 | 41.02 |
| CDX87520 | Canola | nucleus | 44.51 | 40.93 |
| Bra015671.1-P | Field mustard | plastid | 44.51 | 40.93 |
| CDY41784 | Canola | plastid | 39.15 | 40.88 |
| CDX88368 | Canola | plastid | 43.66 | 40.79 |
| KRH17986 | Soybean | plastid | 56.34 | 39.76 |
| KRH16410 | Soybean | plastid | 56.34 | 39.68 |
| PGSC0003DMT400015424 | Potato | plastid | 52.39 | 39.41 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 40.56 | 38.81 |
| CDX92090 | Canola | mitochondrion, nucleus | 38.59 | 38.38 |
| TraesCS5B01G078200.1 | Wheat | plastid | 40.28 | 37.93 |
| Zm00001d010404_P001 | Maize | nucleus | 51.27 | 37.53 |
| AT1G77390.1 | Thale cress | plastid | 46.48 | 37.33 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 39.44 | 37.14 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 32.39 | 33.72 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 34.37 | 32.45 |
| TraesCS5B01G114300.2 | Wheat | plastid | 40.56 | 28.4 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 29.3 | 25.43 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 30.99 | 25.23 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 29.58 | 25.06 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 29.86 | 24.31 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 30.7 | 23.64 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G151800.3 | EnsemblPlantsGene:TraesCS1B01G151800 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:238673204..238675370
Molecular Weight (calculated)
40636.9 Da
IEP (calculated)
6.655
GRAVY (calculated)
-0.232
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDMLTCNS VESPGPPFLD NAASSVATSL RRCANDKLPV SDNRDTTVSR WRKHCPTPIE NDNIFEIETH CKDPELCSTL ACDIYKHLRE AEAKKRPSPD
101: FLETTQKDID TSMRAVLIDW LVEVSISRKK VTEEYRLVPE TLYLTVSYID RYLSSKEINR DKLQLLGIAC LLIAAKYEEI CPPQVEELCY ITDNTYIKDE
201: VLRMEASILG CLMFEMTAPT EKCFLRRFLH AAQLCHEGPA LHLEFLASYI TELSLLEYSL LCHVPSLIAA SSIFLANFIL KPTKNPWNTT LSYHTQYKPS
301: TLRDCVKVLH RLFRVGLGSN LPAIREKYSQ HKYKFVAKKY CRPSIPADFF QDASS
101: FLETTQKDID TSMRAVLIDW LVEVSISRKK VTEEYRLVPE TLYLTVSYID RYLSSKEINR DKLQLLGIAC LLIAAKYEEI CPPQVEELCY ITDNTYIKDE
201: VLRMEASILG CLMFEMTAPT EKCFLRRFLH AAQLCHEGPA LHLEFLASYI TELSLLEYSL LCHVPSLIAA SSIFLANFIL KPTKNPWNTT LSYHTQYKPS
301: TLRDCVKVLH RLFRVGLGSN LPAIREKYSQ HKYKFVAKKY CRPSIPADFF QDASS
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.