Factsheet for TraesCS1A01G138300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS6A01G189800.1
TraesCS6B01G235200.1
TraesCS6D01G176800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	TraesCS6A01G189800.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS6B01G235200.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS6D01G176800.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS2A01G281500.1	AT5G14170.1	20706207
AT1G44110.1	TraesCS2B01G298800.1	AT5G14170.1	20706207
AT1G44110.1	TraesCS2D01G280300.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134100.2	Wheat	nucleus, plastid	83.24	91.61
TraesCS1B01G151800.3	Wheat	nucleus	60.57	89.58
Os05t0237100-01	Rice	extracellular	26.86	71.57
KXG21616	Sorghum	nucleus, plastid	53.14	58.25
TraesCS3A01G157000.1	Wheat	plastid	51.24	52.44
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	36.0	51.08
Zm00001d010404_P001	Maize	nucleus	46.67	50.52
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	47.62	50.0
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	47.81	50.0
Bra032202.1-P	Field mustard	plastid	38.48	47.87
Bra023606.1-P	Field mustard	plastid	37.71	47.26
CDY25649	Canola	plastid	39.24	47.14
CDY65994	Canola	plastid	39.43	46.73
CDY02719	Canola	plastid	38.1	46.62
AT1G44110.1	Thale cress	plastid	40.76	46.52
KRH53279	Soybean	plastid	42.48	46.46
CDX85466	Canola	plastid	37.33	46.45
VIT_18s0001g02060.t01	Wine grape	plastid	43.62	46.26
KRH64625	Soybean	plastid	42.48	46.07
KRH17986	Soybean	plastid	42.48	44.33
PGSC0003DMT400015424	Potato	plastid	39.81	44.28
Solyc11g005090.1.1	Tomato	plastid	41.14	44.08
CDX87520	Canola	nucleus	32.0	43.52
KRH16410	Soybean	plastid	41.71	43.45
Bra015671.1-P	Field mustard	plastid	31.81	43.26
CDX88368	Canola	plastid	31.05	42.89
CDY62408	Canola	nucleus, plasma membrane, plastid	17.14	42.65
CDY41784	Canola	plastid	27.62	42.65
AT1G77390.1	Thale cress	plastid	34.67	41.18
Bra022173.1-P	Field mustard	nucleus, plastid	29.33	40.85
CDX92090	Canola	mitochondrion, nucleus	27.62	40.62
TraesCS4A01G236700.2	Wheat	plastid	28.38	39.73
TraesCS5A01G072000.1	Wheat	plastid	27.62	38.56
TraesCS4A01G051300.1	Wheat	nucleus	21.71	33.24
TraesCS4A01G050700.1	Wheat	nucleus	24.0	33.16
TraesCS3A01G523600.1	Wheat	plastid	29.33	30.37
TraesCS5A01G108500.2	Wheat	plastid	28.38	29.33
TraesCS1A01G309800.1	Wheat	nucleus	22.86	27.52
TraesCS7A01G549500.1	Wheat	nucleus	21.33	26.73
TraesCS2A01G404800.1	Wheat	nucleus	20.38	26.42
TraesCS3A01G192100.1	Wheat	nucleus, plastid	20.76	26.33
TraesCS3A01G333000.2	Wheat	nucleus	23.05	26.3
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	15.43	24.62

Protein Annotations

EnsemblPlants:TraesCS1A01G138300.1	EnsemblPlantsGene:TraesCS1A01G138300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1A:-:230469265..230472558

Molecular Weight (calculated)

57964.4 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.218

Length

525 amino acids

Sequence
(BLAST)

001: MSSRPARRRS SASATAETAG ARAAKAASLE NKRAALGNLT NVAGGRTGGA DAKSSSSNSV AYVKKGSSAG LPNVNRKVAS ATKPTLDRFE RAISHHGNAL
101: QKENVCCPSV PTLAPHGSWP GLSHDSVSME DDMLTCNSVE SPGPLFLDNA ASSVATSLRR CANDKLPVSD NRDTTVSRWR KHCPTPIEND DIFEIETHCK
201: DPELCSTLTC DIYKHLREAE TKKRPSPDFL ETTQKDIDAS MRAVLIDWLV EVTEEYRLVP ETLYLTVSYI DRYLSSKEIN RDKLQLLGVA CLLIAAKYEE
301: ICPPQVEELC YITDNTYIKD EVLQMEASIL GCLKFEMTAP TEKCFLRFLH AAQVCHEVIA SLQLFTVTVS PVCNVVFQLT QPILLQGPAL HLEFLASYIT
401: ELSLLEYSLL CHVPSLIAAS SIFLANFILK PTKNPWNTTL SYHTQYKPST LRDCVKVLHR LFCFGLGSNL PAIREKYSQH KRRSTARRRF QPTSSKMLAV
501: RTWNTRSGSV THSSLPVAGG PKLLG

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.