Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92090 | Canola | mitochondrion, nucleus | 93.84 | 55.46 |
| Os05t0237100-01 | Rice | extracellular | 44.55 | 47.72 |
| CDX88368 | Canola | plastid | 77.25 | 42.89 |
| CDX87520 | Canola | nucleus | 78.2 | 42.75 |
| CDY41784 | Canola | plastid | 63.51 | 39.41 |
| AT1G77390.1 | Thale cress | plastid | 70.62 | 33.71 |
| CDY06752 | Canola | nucleus | 39.34 | 29.12 |
| CDY31481 | Canola | nucleus | 27.96 | 27.19 |
| CDX85466 | Canola | plastid | 54.03 | 27.01 |
| CDY02719 | Canola | plastid | 54.5 | 26.81 |
| CDY22369 | Canola | nucleus | 44.55 | 26.78 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 44.08 | 26.2 |
| CDY25649 | Canola | plastid | 52.61 | 25.4 |
| CDY65994 | Canola | plastid | 52.61 | 25.06 |
| Os12t0298950-00 | Rice | nucleus | 53.08 | 25.06 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 56.4 | 24.04 |
| CDY17091 | Canola | nucleus | 40.28 | 23.74 |
| Solyc11g005090.1.1 | Tomato | plastid | 54.98 | 23.67 |
| KRH64625 | Soybean | plastid | 54.03 | 23.55 |
| KRH53279 | Soybean | plastid | 53.08 | 23.33 |
| CDY23653 | Canola | nucleus | 39.34 | 23.25 |
| CDY47596 | Canola | nucleus | 39.81 | 23.14 |
| PGSC0003DMT400015424 | Potato | plastid | 51.66 | 23.09 |
| CDY48212 | Canola | nucleus | 41.23 | 23.08 |
| Os01t0233100-00 | Rice | nucleus, plastid | 53.08 | 22.81 |
| CDY17037 | Canola | nucleus, plastid | 39.34 | 22.8 |
| CDY47595 | Canola | nucleus, plastid | 39.81 | 22.64 |
| CDY17039 | Canola | nucleus | 38.86 | 22.59 |
| CDY61993 | Canola | nucleus | 40.28 | 22.55 |
| KRH16410 | Soybean | plastid | 53.55 | 22.42 |
| CDY66770 | Canola | nucleus | 38.39 | 22.38 |
| KRH17986 | Soybean | plastid | 53.08 | 22.27 |
| KXG21616 | Sorghum | nucleus, plastid | 50.24 | 22.13 |
| Os01t0233500-01 | Rice | nucleus, plastid | 53.08 | 22.05 |
| CDY06757 | Canola | nucleus, plastid | 37.91 | 22.04 |
| TraesCS3D01G164600.1 | Wheat | plastid | 52.61 | 21.76 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 51.66 | 21.71 |
| TraesCS3A01G157000.1 | Wheat | plastid | 52.61 | 21.64 |
| CDX81722 | Canola | nucleus, plastid | 41.23 | 21.59 |
| TraesCS3B01G183400.1 | Wheat | plastid | 52.13 | 21.57 |
| CDY53304 | Canola | plastid | 41.71 | 21.52 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 50.71 | 21.4 |
| CDX87087 | Canola | plastid | 42.18 | 21.34 |
| Zm00001d040381_P001 | Maize | plastid | 52.13 | 20.64 |
| CDX79389 | Canola | plastid | 41.71 | 20.32 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 45.5 | 20.13 |
| CDX97090 | Canola | nucleus | 41.23 | 19.95 |
| CDY36574 | Canola | mitochondrion, nucleus | 41.23 | 19.95 |
| CDX67944 | Canola | plastid | 40.76 | 19.91 |
| CDY66415 | Canola | nucleus | 40.76 | 19.82 |
| CDX96836 | Canola | nucleus, plastid | 41.23 | 19.77 |
| CDY37592 | Canola | mitochondrion, plastid | 42.18 | 19.47 |
| CDX69768 | Canola | nucleus, plastid | 40.28 | 19.45 |
| CDY38664 | Canola | nucleus, plastid | 40.76 | 18.9 |
| CDY39984 | Canola | plastid | 39.34 | 18.53 |
| CDX87305 | Canola | plastid | 39.81 | 18.18 |
| CDX72551 | Canola | nucleus | 33.65 | 17.71 |
| CDY67210 | Canola | nucleus | 33.65 | 17.49 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 42.18 | 17.45 |
| CDX69311 | Canola | nucleus | 34.6 | 17.42 |
| CDX75659 | Canola | nucleus | 35.07 | 17.29 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 42.65 | 17.14 |
| CDY62475 | Canola | nucleus | 26.54 | 15.95 |
| Zm00001d010404_P001 | Maize | nucleus | 36.49 | 15.88 |
| CDY69551 | Canola | nucleus | 26.54 | 15.77 |
| CDY29520 | Canola | nucleus | 30.33 | 15.61 |
| CDY26816 | Canola | nucleus | 29.86 | 15.48 |
| CDX80988 | Canola | plastid | 31.28 | 15.42 |
| CDX96631 | Canola | nucleus | 29.86 | 15.37 |
| CDY11354 | Canola | plastid | 31.28 | 15.24 |
| CDY33634 | Canola | nucleus | 29.38 | 15.2 |
| CDY30357 | Canola | nucleus | 29.38 | 15.16 |
| CDX85942 | Canola | nucleus | 28.91 | 14.95 |
| CDX68105 | Canola | nucleus | 27.96 | 14.94 |
| CDY07838 | Canola | nucleus | 29.38 | 14.83 |
| CDY29184 | Canola | nucleus | 29.38 | 14.8 |
| CDX87612 | Canola | nucleus | 29.86 | 14.62 |
| CDX88261 | Canola | nucleus | 29.38 | 14.42 |
| Zm00001d032128_P001 | Maize | cytosol | 7.58 | 10.13 |
| CDY14091 | Canola | plastid | 31.28 | 10.06 |
| CDY33338 | Canola | nucleus | 27.49 | 9.93 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 44.08 | 9.4 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.54 | 9.2 |
| CDY04980 | Canola | nucleus | 31.28 | 9.19 |
| CDX96819 | Canola | nucleus | 26.54 | 8.68 |
| CDX83953 | Canola | nucleus | 26.54 | 8.55 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 7.58 | 8.0 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | GO:A0A078JDB2 | UniProt:A0A078JDB2 | EnsemblPlants:CDY62408 | ProteinID:CDY62408 |
| ProteinID:CDY62408.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00036237001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE788B | SEG:seg | : | : | : | : |
Description
BnaCnng40230DBnaCnng40230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDB2]
Coordinates
chrLK034139:+:8910..9665
Molecular Weight (calculated)
24130.2 Da
IEP (calculated)
8.441
GRAVY (calculated)
-0.025
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MERYLSGNVI TELNLQLLGV SCIMISAKYY GRGSVRAPPR QVESFCYITD YTYSSNELLE MESCVLNYLK FELTTPTANC FLSRFVPQGK REEEVLSHLL
101: FESLASYLCV LSLLDYAMLR YAPSLVAASA VFLARYVLHP SRKPSWSSTL EHYTRYRAEH LEACVKNLLR LCHESPSGDN VVAVRKKYSK AKYKFAANMI
201: YPTSLPQELF L
101: FESLASYLCV LSLLDYAMLR YAPSLVAASA VFLARYVLHP SRKPSWSSTL EHYTRYRAEH LEACVKNLLR LCHESPSGDN VVAVRKKYSK AKYKFAANMI
201: YPTSLPQELF L
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.