Factsheet for VIT_18s0001g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0068g02140.t01
VIT_17s0000g00210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	VIT_17s0000g00210.t01	AT5G07300.1	20706207
AT1G44110.1	VIT_14s0068g02140.t01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	53.54	71.62
KRH53279	Soybean	plastid	68.28	70.42
Os05t0237100-01	Rice	extracellular	27.88	70.05
KRH64625	Soybean	plastid	68.28	69.83
Solyc11g005090.1.1	Tomato	plastid	66.67	67.35
PGSC0003DMT400015424	Potato	plastid	63.64	66.74
AT1G44110.1	Thale cress	plastid	58.99	63.48
Bra032202.1-P	Field mustard	plastid	52.93	62.09
CDY25649	Canola	plastid	54.14	61.33
KRH17986	Soybean	plastid	62.02	61.03
KRH16410	Soybean	plastid	61.82	60.71
Bra023606.1-P	Field mustard	plastid	51.31	60.62
CDY65994	Canola	plastid	54.14	60.5
CDX85466	Canola	plastid	50.91	59.72
Os12t0298950-00	Rice	nucleus	53.74	59.51
CDY02719	Canola	plastid	51.11	58.97
TraesCS1B01G151800.3	Wheat	nucleus	42.22	58.87
Zm00001d032128_P001	Maize	cytosol	18.59	58.23
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	58.38	57.8
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	58.38	57.57
CDX87520	Canola	nucleus	44.24	56.74
Os01t0233100-00	Rice	nucleus, plastid	56.16	56.62
CDX88368	Canola	plastid	43.43	56.58
Os01t0233500-01	Rice	nucleus, plastid	57.98	56.5
Bra015671.1-P	Field mustard	plastid	44.04	56.48
CDY62408	Canola	nucleus, plasma membrane, plastid	24.04	56.4
CDY41784	Canola	plastid	38.59	56.18
TraesCS3D01G164600.1	Wheat	plastid	56.77	55.1
TraesCS3A01G157000.1	Wheat	plastid	56.97	54.97
TraesCS3B01G183400.1	Wheat	plastid	56.57	54.9
Zm00001d040381_P001	Maize	plastid	58.99	54.78
AT1G77390.1	Thale cress	plastid	48.28	54.07
TraesCS1D01G134100.2	Wheat	nucleus, plastid	48.48	50.31
Zm00001d009011_P001	Maize	nucleus, plastid	51.11	49.61
Bra022173.1-P	Field mustard	nucleus, plastid	37.58	49.34
KXG21616	Sorghum	nucleus, plastid	47.68	49.27
CDX92090	Canola	mitochondrion, nucleus	35.35	49.02
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	33.74	45.75
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	36.36	44.89
Zm00001d021353_P002	Maize	mitochondrion, nucleus	17.98	44.5
TraesCS1A01G138300.1	Wheat	nucleus, plastid	46.26	43.62
VIT_03s0091g00280.t01	Wine grape	nucleus	29.7	43.11
Zm00001d010404_P001	Maize	nucleus	38.79	39.59
VIT_09s0002g05240.t01	Wine grape	nucleus	38.38	38.78
VIT_06s0009g02090.t01	Wine grape	nucleus	24.24	28.71
VIT_18s0001g14170.t01	Wine grape	nucleus	25.05	28.12
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	24.04	28.07
VIT_08s0040g00930.t01	Wine grape	nucleus	24.04	26.27
VIT_13s0067g01420.t01	Wine grape	nucleus	24.04	25.76
VIT_19s0085g00690.t01	Wine grape	nucleus	23.03	18.87

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100250590	wikigene:100250590	MapMan:13.1.1.1.1	ProteinID:CCB45465	ProteinID:CCB45465.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:F6H0J3	EMBL:FN595227
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100250590	wikigene:LOC100250590
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:TC53456	UniParc:UPI0001985350	ArrayExpress:VIT_18s0001g02060
EnsemblPlantsGene:VIT_18s0001g02060	EnsemblPlants:VIT_18s0001g02060.t01	unigene:Vvi.16541	RefSeq:XP_002284567	RefSeq:XP_002284567.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:2479868..2484109

Molecular Weight (calculated)

54926.5 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.288

Length

495 amino acids

Sequence
(BLAST)

001: MSTQNRRSSV SSSSSSSSLM KRSSSDNHGK VTTVPSHLAK KRPPLSNITN QKNASLSGLK SSAAVGTMVP CAEKISKAKR GSSKISRSVG ITGNTSSASL
101: NVKPTAVIPC KDTSLPKSDG TASTVTALPD PCSLDVSPNR SDGISASMDE TMSTCDSFKS PEVEYMDVDD LAVNSIERKT CSKLYISEHV EAEGNICSED
201: IHVETETNGK IADIDDNFGD PQFCATMACD IYKHLRASEA RKRPSTDFME RIQKDVNASM RSILIDWLVE VAEEYRLVPD TLYLTVNFID RYLSGNVMNR
301: QQLQLLGVAC MMIAAKYEEI CAPQVEEFCY ITDNTYFKEE VLQMESSVLN YLKFEMTAPT AKCFLRRFVR AAQGMNEVPS LQLECLANYI AELSLLEYSM
401: LCYAPSLIAA SAIFLANYIL LPSKRPWNST LRHYTLYQPS DLCDCVKALH RLCCNNHNSS LPAIREKYSQ HKYKFVAKKY CPPSIPSELF HNLSN

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.