Factsheet for VIT_03s0038g02800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P19270_001	Banana	cytosol	32.31	63.13
VIT_18s0001g14170.t01	Wine grape	nucleus	65.09	62.59
KRH60628	Soybean	nucleus	58.49	61.23
KRH51329	Soybean	nucleus, plastid	58.49	59.76
GSMUA_Achr11P...	Banana	nucleus	56.37	58.58
GSMUA_Achr8P13320_001	Banana	nucleus	57.08	57.62
GSMUA_Achr5P19110_001	Banana	nucleus	57.31	57.31
Os06t0726800-01	Rice	nucleus	55.9	56.56
KXG20945	Sorghum	nucleus	54.72	54.72
HORVU7Hr1G121820.6	Barley	nucleus	54.01	54.52
TraesCS7D01G536000.1	Wheat	nucleus	53.77	54.42
TraesCS7B01G472800.1	Wheat	nucleus	53.77	54.42
TraesCS7A01G549500.1	Wheat	nucleus	53.54	54.18
HORVU0Hr1G022770.1	Barley	nucleus, plastid	35.38	53.96
TraesCS2A01G404800.1	Wheat	nucleus	51.42	53.83
Os04t0563700-01	Rice	mitochondrion	53.07	53.57
Zm00001d036360_P002	Maize	nucleus	53.54	53.54
TraesCS2B01G422800.1	Wheat	nucleus	51.18	53.06
TraesCS2D01G401700.1	Wheat	nucleus, plastid	51.65	52.02
Zm00001d026129_P001	Maize	nucleus	50.94	50.7
EES12664	Sorghum	nucleus	51.18	50.23
Zm00001d002662_P010	Maize	nucleus	51.42	47.91
HORVU2Hr1G096070.2	Barley	nucleus	51.18	46.07
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	59.2	37.57
VIT_06s0009g02090.t01	Wine grape	nucleus	34.67	35.17
VIT_08s0040g00930.t01	Wine grape	nucleus	36.79	34.44
VIT_13s0067g01420.t01	Wine grape	nucleus	34.91	32.03
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	25.0	28.65
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	24.29	28.22
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	26.65	28.18
VIT_03s0091g00280.t01	Wine grape	nucleus	21.46	26.69
VIT_19s0085g00690.t01	Wine grape	nucleus	35.85	25.17
VIT_18s0001g02060.t01	Wine grape	plastid	28.07	24.04
VIT_09s0002g05240.t01	Wine grape	nucleus	27.12	23.47

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100262390	wikigene:100262390	MapMan:13.1.1.1.2	ProteinID:CBI37831	ProteinID:CBI37831.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:D7U512	EMBL:FN596508
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100262390	wikigene:LOC100262390
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF336
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001BE5164	ArrayExpress:VIT_03s0038g02800	EnsemblPlantsGene:VIT_03s0038g02800
EnsemblPlants:VIT_03s0038g02800.t01	RefSeq:XP_002278139	RefSeq:XP_002278139.1	RefSeq:XP_010646635.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:1951070..1954840

Molecular Weight (calculated)

48330.2 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.196

Length

424 amino acids

Sequence
(BLAST)

001: MDSGSHQAKS DLNGASNQQG ALRIGGSKFV PQMKRSNRRA LGNIDQNILG ATLQPCVITK RESSGKDAIC MKNPENLAYI QTTRNFAGEM EIEKPTTLAS
101: NLSGHEDCKI EDVGEFRDVI DASTPMFVKH TEAILDEIDE IEEIEMEDAM EDDLVLDIDG SDIENPLAVV EYIDDIYHFY RKTESLSCVS PTYMSFQFDI
201: NQKMRAILID WLIEVHYKFE LMDETLFLTV NLIDRFLERQ TVSRKKLQLV GMTAMLLACK YEEVCVPIVE DLIVICDKAY TRTEVLDMEK VMVNTLQFNM
301: SVPTPYVFMR RFLKAAQSDR KLELLSFYII ELCLVEYEML KFPPSLLAAA AVYTAQCSVL KSSQWSKTSE WHTAYSEDQL MECSRMMVTF HQKAGTGKLT
401: GVHRKYSTHK FGYAARSEPA QFLL

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.