Factsheet for VIT_06s0009g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058457	Potato	nucleus	63.16	63.16
Solyc01g009040.2.1	Tomato	nucleus	64.83	62.3
PGSC0003DMT400015245	Potato	nucleus	58.85	56.04
TraesCSU01G217300.1	Wheat	cytosol	28.71	55.56
Solyc06g073610.2.1	Tomato	nucleus	58.37	55.45
Zm00001d019469_P001	Maize	extracellular	18.9	55.24
VIT_08s0040g00930.t01	Wine grape	nucleus	58.85	54.3
KRH14611	Soybean	nucleus	56.46	53.76
VIT_13s0067g01420.t01	Wine grape	nucleus	58.37	52.81
HORVU0Hr1G001680.1	Barley	nucleus	40.43	52.81
KRH73516	Soybean	nucleus	54.55	51.82
GSMUA_AchrUn_...	Banana	nucleus	36.36	51.01
HORVU1Hr1G068080.1	Barley	plastid	41.15	50.29
GSMUA_Achr7P21380_001	Banana	nucleus	54.55	49.89
GSMUA_Achr4P10090_001	Banana	nucleus	50.48	49.65
GSMUA_Achr3P24980_001	Banana	nucleus	46.89	48.76
GSMUA_Achr10P...	Banana	nucleus	51.91	47.9
Zm00001d012560_P002	Maize	nucleus, plastid	51.44	47.88
KXG24389	Sorghum	nucleus	28.71	47.62
GSMUA_Achr8P23970_001	Banana	nucleus	49.28	47.36
EES03772	Sorghum	nucleus, plastid	50.48	46.99
TraesCS1D01G309300.1	Wheat	nucleus, plastid	48.09	46.1
TraesCS3D01G326600.1	Wheat	nucleus	50.0	45.93
TraesCS1B01G320900.1	Wheat	nucleus, plastid	47.85	45.87
TraesCS3D01G195200.1	Wheat	plastid	45.22	45.76
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	45.93	45.71
TraesCS3A01G192100.1	Wheat	nucleus, plastid	45.22	45.65
TraesCS1A01G309800.1	Wheat	nucleus	47.61	45.64
TraesCS3A01G333000.2	Wheat	nucleus	50.0	45.43
TraesCS3B01G363200.3	Wheat	nucleus	49.76	45.12
HORVU3Hr1G078880.2	Barley	nucleus	48.8	45.03
Os01t0281200-01	Rice	nucleus	45.45	44.92
TraesCS1D01G309400.1	Wheat	nucleus	46.89	44.85
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	46.65	44.52
TraesCS1B01G321000.1	Wheat	nucleus	46.41	44.5
HORVU0Hr1G026010.1	Barley	nucleus, plastid	46.89	44.24
HORVU1Hr1G068160.2	Barley	nucleus, plastid	46.89	44.24
Zm00001d043164_P002	Maize	nucleus	50.72	43.8
Zm00001d010656_P001	Maize	nucleus	45.22	42.38
EES18429	Sorghum	mitochondrion	44.74	40.65
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	31.82	40.43
EES02793	Sorghum	nucleus	44.02	39.74
Zm00001d008221_P001	Maize	nucleus	44.5	38.83
Os05t0493500-00	Rice	nucleus	44.26	37.99
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	35.65	37.63
HORVU3Hr1G040990.2	Barley	nucleus, plastid	44.02	37.4
VIT_18s0001g14170.t01	Wine grape	nucleus	37.8	35.83
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	35.17	34.67
Zm00001d020033_P001	Maize	nucleus	42.58	32.72
Zm00001d020996_P001	Maize	nucleus	41.87	32.17
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	28.47	32.16
VIT_03s0091g00280.t01	Wine grape	nucleus	24.64	30.21
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	26.32	30.14
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	27.75	28.93
VIT_18s0001g02060.t01	Wine grape	plastid	28.71	24.24
VIT_19s0085g00690.t01	Wine grape	nucleus	34.93	24.17
VIT_09s0002g05240.t01	Wine grape	nucleus	27.51	23.47

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100254743	wikigene:100254743	MapMan:13.1.1.1.2	ProteinID:CCB49120	ProteinID:CCB49120.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:F6HAG0	EMBL:FN595504
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100254743	wikigene:LOC100254743
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002109DDF	ArrayExpress:VIT_06s0009g02090	EnsemblPlantsGene:VIT_06s0009g02090
EnsemblPlants:VIT_06s0009g02090.t01	RefSeq:XP_002268488	RefSeq:XP_002268488.1	RefSeq:XP_002268488.2	:	:

Description

No Description!

Coordinates

chr6:-:14388028..14390161

Molecular Weight (calculated)

47060.0 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.245

Length

418 amino acids

Sequence
(BLAST)

001: MASRVVPVPN QPRGGKQKNA PEKARNRQAL REIGNLMNDT IPAGEGTFNP QISRPLTRSF CAQLPENGRA QKPIAEVVSV HGFAPGKARK KPKPQTVVTI
101: SPDENDKSKP STQGSLTKKV KTLSSILTTQ SKMAACRLTD RPRVPIINID ADDVDNELAA VEYVDDIYQF YKMTEDENRT IHYMDLQTDI NSKMRAILID
201: WLVEVHRKLE LMPETLYLTI NIIDRYLSTK IVSRSELQLV GITSMLIACK YEEIWAPEVN DFVCISDNAY AREQILQMEK SILTKLEWYL TVPTPYVFLV
301: RYIKASVAPD QEMEEMVFFL TELGLMNYST ILYSPSMLAA SAVYAARCTL RRIPLWSATL KHYTGYTQDQ LMDCAKLLVS FHLGAAENKL KAVYQKFSEL
401: ERGAVAHVSP AKNLSAGA

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.