Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 3
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 41.96 | 30.15 |
| Zm00001d008221_P001 | Maize | nucleus | 88.11 | 26.3 |
| EES02793 | Sorghum | nucleus | 83.22 | 25.7 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 66.43 | 23.99 |
| Zm00001d020996_P001 | Maize | nucleus | 89.51 | 23.53 |
| Zm00001d020033_P001 | Maize | nucleus | 89.51 | 23.53 |
| TraesCS3D01G195200.1 | Wheat | plastid | 67.83 | 23.49 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 67.83 | 23.43 |
| Os01t0281200-01 | Rice | nucleus | 68.53 | 23.17 |
| CDY69551 | Canola | nucleus | 51.05 | 20.56 |
| CDY62475 | Canola | nucleus | 50.35 | 20.51 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 67.83 | 19.72 |
| Zm00001d032128_P001 | Maize | cytosol | 21.68 | 19.62 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 55.24 | 18.9 |
| AT2G26760.1 | Thale cress | nucleus | 51.05 | 18.86 |
| PGSC0003DMT400058457 | Potato | nucleus | 54.55 | 18.66 |
| PGSC0003DMT400018480 | Potato | nucleus | 55.24 | 18.59 |
| Solyc10g078330.1.1 | Tomato | nucleus | 54.55 | 18.44 |
| Bra002046.1-P | Field mustard | nucleus | 50.35 | 18.32 |
| Solyc06g073610.2.1 | Tomato | nucleus | 55.94 | 18.18 |
| AT3G11520.1 | Thale cress | nucleus | 52.45 | 18.12 |
| KRH66715 | Soybean | nucleus | 49.65 | 18.11 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 57.34 | 18.1 |
| Bra028741.1-P | Field mustard | nucleus | 52.45 | 18.07 |
| KRH14611 | Soybean | nucleus | 55.24 | 18.0 |
| PGSC0003DMT400015245 | Potato | nucleus | 55.24 | 18.0 |
| KRH73516 | Soybean | nucleus | 55.24 | 17.95 |
| Solyc01g009040.2.1 | Tomato | nucleus | 54.55 | 17.93 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 51.75 | 17.87 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 55.94 | 17.82 |
| KRH66718 | Soybean | plastid | 46.15 | 17.69 |
| AT5G06150.1 | Thale cress | nucleus | 54.55 | 17.53 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 55.94 | 17.32 |
| Zm00001d010656_P001 | Maize | nucleus | 53.85 | 17.26 |
| CDX80988 | Canola | plastid | 51.05 | 17.06 |
| Zm00001d043164_P002 | Maize | nucleus | 57.34 | 16.94 |
| KRG95055 | Soybean | nucleus | 53.85 | 16.92 |
| Zm00001d026129_P001 | Maize | nucleus | 50.35 | 16.9 |
| CDY11354 | Canola | plastid | 51.05 | 16.86 |
| KRH66713 | Soybean | nucleus | 53.15 | 16.74 |
| CDX69311 | Canola | nucleus | 48.95 | 16.71 |
| PGSC0003DMT400072211 | Potato | nucleus | 53.85 | 16.59 |
| Solyc10g080950.1.1 | Tomato | nucleus | 53.15 | 16.45 |
| Bra011769.1-P | Field mustard | nucleus | 48.95 | 16.36 |
| CDX75659 | Canola | nucleus | 48.95 | 16.36 |
| Zm00001d036360_P002 | Maize | nucleus | 48.25 | 16.27 |
| AT4G37490.1 | Thale cress | nucleus | 48.25 | 16.12 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 22.38 | 16.0 |
| Zm00001d002662_P010 | Maize | nucleus | 50.35 | 15.82 |
| KRG95056 | Soybean | cytosol | 39.86 | 14.73 |
| Zm00001d033365_P002 | Maize | nucleus | 37.76 | 14.52 |
| Zm00001d013744_P001 | Maize | nucleus | 32.87 | 13.17 |
| Zm00001d010404_P001 | Maize | nucleus | 40.56 | 11.96 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 43.36 | 11.9 |
| Zm00001d030849_P001 | Maize | nucleus | 34.27 | 11.58 |
| CDY14091 | Canola | plastid | 52.45 | 11.43 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 38.46 | 11.34 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 34.27 | 11.21 |
| Zm00001d040381_P001 | Maize | plastid | 40.56 | 10.88 |
| AT1G34460.5 | Thale cress | cytosol | 37.76 | 10.84 |
| CDY04980 | Canola | nucleus | 52.45 | 10.45 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 32.17 | 9.02 |
| Zm00001d048127_P001 | Maize | plastid | 28.67 | 8.56 |
Protein Annotations
| EnsemblPlants:Zm00001d019469_P001 | EnsemblPlants:Zm00001d019469_T001 | EnsemblPlantsGene:Zm00001d019469 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF211 | PFAM:PF00134 | ProteinID:ONM52961.1 | SMART:SM00385 |
| SUPFAM:SSF47954 | UniParc:UPI000844E61C | UniProt:A0A1D6HXL7 | MapMan:35.1 | : | : |
Description
Cyclin-B1-4
Coordinates
chr7:+:35279231..35280394
Molecular Weight (calculated)
16710.7 Da
IEP (calculated)
4.727
GRAVY (calculated)
0.226
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSQAEISER MRAILIDWII EVQYRLTLMP ETLYLTVYII DQYLSMESVP RKELQLVGIS AMLIASKYEE IWAPLSILRL AYTTSSDILQ VKDLMCLCDN
101: AFTRDQVLTK EKAILDRLHW NLTVPTMYMF IVRYLKAAMC DTE
101: AFTRDQVLTK EKAILDRLHW NLTVPTMYMF IVRYLKAAMC DTE
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.