Factsheet for PGSC0003DMT400015245

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073610.2.1	Tomato	nucleus	94.08	93.86
PGSC0003DMT400058457	Potato	nucleus	64.24	67.46
VIT_06s0009g02090.t01	Wine grape	nucleus	56.04	58.85
PGSC0003DMT400018480	Potato	nucleus	56.04	57.88
TraesCSU01G217300.1	Wheat	cytosol	27.56	56.02
HORVU0Hr1G001680.1	Barley	nucleus	40.32	55.31
Zm00001d019469_P001	Maize	extracellular	18.0	55.24
KRH14611	Soybean	nucleus	55.13	55.13
KRH73516	Soybean	nucleus	54.9	54.77
PGSC0003DMT400072211	Potato	nucleus	55.81	52.8
GSMUA_Achr4P10090_001	Banana	nucleus	51.03	52.71
HORVU1Hr1G068080.1	Barley	plastid	41.0	52.63
GSMUA_Achr7P21380_001	Banana	nucleus	53.99	51.86
KXG24389	Sorghum	nucleus	29.39	51.19
GSMUA_AchrUn_...	Banana	nucleus	34.62	51.01
GSMUA_Achr3P24980_001	Banana	nucleus	46.24	50.5
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	48.06	50.24
EES03772	Sorghum	nucleus, plastid	51.03	49.89
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	49.2	49.32
GSMUA_Achr10P...	Banana	nucleus	50.8	49.23
TraesCS1D01G309300.1	Wheat	nucleus, plastid	48.75	49.08
Zm00001d012560_P002	Maize	nucleus, plastid	50.11	49.0
GSMUA_Achr8P23970_001	Banana	nucleus	48.06	48.51
TraesCS1A01G309800.1	Wheat	nucleus	48.06	48.39
TraesCS1B01G320900.1	Wheat	nucleus, plastid	48.06	48.39
TraesCS3B01G363200.3	Wheat	nucleus	50.34	47.94
TraesCS3D01G326600.1	Wheat	nucleus	49.66	47.91
HORVU3Hr1G078880.2	Barley	nucleus	49.43	47.9
TraesCS1D01G309400.1	Wheat	nucleus	47.61	47.83
HORVU0Hr1G026010.1	Barley	nucleus, plastid	48.06	47.63
HORVU1Hr1G068160.2	Barley	nucleus, plastid	48.06	47.63
TraesCS3A01G333000.2	Wheat	nucleus	49.66	47.39
Os01t0281200-01	Rice	nucleus	45.56	47.28
TraesCS1B01G321000.1	Wheat	nucleus	46.7	47.02
Zm00001d043164_P002	Maize	nucleus	51.03	46.28
PGSC0003DMT400075380	Potato	nucleus	24.6	45.57
TraesCS3A01G192100.1	Wheat	nucleus, plastid	42.82	45.41
TraesCS3D01G195200.1	Wheat	plastid	42.6	45.28
Zm00001d010656_P001	Maize	nucleus	45.79	45.07
EES18429	Sorghum	mitochondrion	46.01	43.91
EES02793	Sorghum	nucleus	43.74	41.47
Os05t0493500-00	Rice	nucleus	45.79	41.27
Zm00001d008221_P001	Maize	nucleus	43.96	40.29
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	29.84	39.82
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	35.76	39.65
HORVU3Hr1G040990.2	Barley	nucleus, plastid	42.14	37.6
PGSC0003DMT400093973	Potato	nucleus	27.79	36.97
PGSC0003DMT400003868	Potato	nucleus	35.76	36.26
Zm00001d020033_P001	Maize	nucleus	43.05	34.74
PGSC0003DMT400048062	Potato	nucleus	33.49	34.11
Zm00001d020996_P001	Maize	nucleus	42.14	34.01
PGSC0003DMT400025854	Potato	nucleus	33.94	33.79
PGSC0003DMT400055428	Potato	nucleus	25.28	30.16
PGSC0003DMT400030222	Potato	nucleus	24.15	29.94
PGSC0003DMT400030176	Potato	nucleus	23.69	29.21
PGSC0003DMT400056625	Potato	nucleus	23.69	27.37
PGSC0003DMT400015424	Potato	plastid	26.65	24.79
PGSC0003DMT400006576	Potato	nucleus	25.28	23.97
PGSC0003DMT400067117	Potato	plastid	26.65	23.54

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102592069	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1A5P4
PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400005948	PGSC:PGSC0003DMG400005948	EnsemblPlants:PGSC0003DMT400015245	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0002957E6E	RefSeq:XP_006361142.1	SEG:seg	:	:	:

Description

Cyclin B1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005948]

Coordinates

chr6:+:54214019..54216952

Molecular Weight (calculated)

48951.3 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.306

Length

439 amino acids

Sequence
(BLAST)

001: MANRDAVPKI LPKVVGGGEV KKKNGLADGR TRRALGDIGN LVTGPAIGAK PQTKVSRPIT RRSAAQLIVK GQEPLQKNKT KPLVTKGVAA RKVGVPAKPE
101: ANKKDSVKAK AGTISVICPD EDVKTIEKIT LKERKVRKSG KTLTSILTAR SKAACGLSNK PRTQIVDIDA ADVDNHLAGV EYVEDIYKFY KLTEDENRPC
201: DYMDSQPEIN DRVRAILVDW LIEAHKRFEL RPESLYLTVN IMDRFLSEET VPRRELQLLC ISSMLIACKY EEIWAPEVND FLTITDNAYV RDQILLMEKV
301: ILGKLEWYLT VPTPYVFLVR YIKAAVPSDQ EMENMTFFLA ELGLMNYTTV ISYCPSKFAA SAVYAARSTL NKSPRWTDTL KHHTGYSEDQ LRECAKQLVS
401: FHSGAAENKL KAVFRKFSSP DRGAVALLPP ARDVHIGSS

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.