CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90152
EER91871
EER92268
EER94106
EER97682
EES04403
EES05388
EES11052
EES11053
EES11054
EES11600
EES12225
EES13543
EES14672
EES15619
EES19069
KXG26586
KXG26599
KXG26629
KXG26630
KXG27072
KXG29757
KXG33923
KXG35736
KXG40187
KXG40336
OQU80908
OQU81862
OQU85258
OQU87155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11520.1	EES05388	AT1G05805.1	20706207
AT3G11520.1	KXG26599	AT1G05805.1	20706207
AT3G11520.1	KXG33923	AT1G05805.1	20706207
AT3G11520.1	EER92268	AT1G56110.1	20706207
AT3G11520.1	EER97682	AT1G56110.1	20706207
AT3G11520.1	EES19069	AT3G61650.1	20706207
AT3G11520.1	KXG35736	AT5G06680.1	20706207
AT3G11520.1	EER91871	AT5G46780.1	20706207
AT4G37490.1	EER90152	AT1G20930.1	20706207
AT4G37490.1	OQU80908	AT1G20930.1	20706207
AT4G37490.1	EER90152	AT1G76540.1	20706207
AT4G37490.1	OQU80908	AT1G76540.1	20706207
AT4G37490.1	EES04403	AT3G48750.1	12065421
AT4G37490.1	KXG40336	AT3G48750.1	12065421
AT4G37490.1	EES15619	AT3G54180.1	12065421
AT5G06150.1	EES13543	AT1G04810.1	20706207
AT5G06150.1	KXG27072	AT1G04810.1	20706207
AT5G06150.1	EER90152	AT1G20930.1	20706207
AT5G06150.1	OQU80908	AT1G20930.1	20706207
AT5G06150.1	EER94106	AT1G48920.1	20706207
AT5G06150.1	EES14672	AT1G48920.1	20706207
AT5G06150.1	EES12225	AT1G71380.1	20706207
AT5G06150.1	KXG40187	AT2G27960.1	20706207
AT5G06150.1	KXG40187	AT2G27970.1	20706207
AT5G06150.1	EES11600	AT3G11270.1	20706207
AT5G06150.1	EES15619	AT3G54180.1	20706207
AT5G06150.1	KXG26586	AT4G24820.1	20706207
AT5G06150.1	OQU85258	AT4G24820.1	20706207
AT5G06150.1	EES11052	AT5G25460.1	20706207
AT5G06150.1	EES11053	AT5G25460.1	20706207
AT5G06150.1	EES11054	AT5G25460.1	20706207
AT5G06150.1	KXG26629	AT5G25460.1	20706207
AT5G06150.1	KXG26630	AT5G25460.1	20706207
AT5G06150.1	KXG29757	AT5G25460.1	20706207
AT5G06150.1	OQU81862	AT5G25460.1	20706207
AT5G06150.1	OQU87155	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012560_P002	Maize	nucleus, plastid	90.2	90.2
Zm00001d043164_P002	Maize	nucleus	90.65	84.09
KXG24389	Sorghum	nucleus	42.76	76.19
HORVU3Hr1G078880.2	Barley	nucleus	67.48	66.89
TraesCS3D01G326600.1	Wheat	nucleus	67.48	66.59
TraesCSU01G217300.1	Wheat	cytosol	31.85	66.2
TraesCS3B01G363200.3	Wheat	nucleus	67.93	66.16
TraesCS3A01G333000.2	Wheat	nucleus	67.48	65.87
PGSC0003DMT400058457	Potato	nucleus	50.56	54.31
Solyc01g009040.2.1	Tomato	nucleus	52.56	54.25
GSMUA_AchrUn_...	Banana	nucleus	35.86	54.03
EES18429	Sorghum	mitochondrion	54.79	53.48
VIT_08s0040g00930.t01	Wine grape	nucleus	53.45	52.98
Bra028741.1-P	Field mustard	nucleus	48.78	52.77
PGSC0003DMT400018480	Potato	nucleus	49.44	52.24
Solyc10g078330.1.1	Tomato	nucleus	48.78	51.77
KRH66720	Soybean	endoplasmic reticulum, vacuole	22.94	51.76
KRG95055	Soybean	nucleus	52.12	51.43
Bra005880.1-P	Field mustard	nucleus, plastid	47.22	51.21
Solyc10g080950.1.1	Tomato	nucleus	52.56	51.08
PGSC0003DMT400015245	Potato	nucleus	49.89	51.03
PGSC0003DMT400072211	Potato	nucleus	52.34	50.65
Bra002046.1-P	Field mustard	nucleus	44.32	50.64
VIT_06s0009g02090.t01	Wine grape	nucleus	46.99	50.48
CDY69551	Canola	nucleus	39.87	50.42
AT2G26760.1	Thale cress	nucleus	43.43	50.39
KRH66713	Soybean	nucleus	50.78	50.22
CDY11354	Canola	plastid	48.33	50.12
CDY62475	Canola	nucleus	38.75	49.57
CDX80988	Canola	plastid	47.22	49.53
AT3G11520.1	Thale cress	nucleus	45.66	49.52
KRH66715	Soybean	nucleus	43.21	49.49
VIT_13s0067g01420.t01	Wine grape	nucleus	50.78	49.35
Solyc06g073610.2.1	Tomato	nucleus	48.33	49.32
KRH14611	Soybean	nucleus	48.11	49.2
KRH73516	Soybean	nucleus	47.44	48.41
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	35.41	48.33
AT5G06150.1	Thale cress	nucleus	47.66	48.09
KRH66718	Soybean	plastid	38.08	45.84
CDX69311	Canola	nucleus	42.32	45.35
AT4G37490.1	Thale cress	nucleus	43.21	45.33
CDX75659	Canola	nucleus	42.54	44.63
Bra011769.1-P	Field mustard	nucleus	42.54	44.63
KRG95056	Soybean	cytosol	37.19	43.15
EES02793	Sorghum	nucleus	42.32	41.04
OQU91386	Sorghum	nucleus	22.27	38.31
KXG20945	Sorghum	nucleus	34.08	36.08
EES12664	Sorghum	nucleus	32.96	34.26
CDY14091	Canola	plastid	48.33	33.08
CDY04980	Canola	nucleus	48.55	30.36
AT1G34460.5	Thale cress	cytosol	31.85	28.71
EES16237	Sorghum	nucleus, plastid	26.28	27.57
EER95303	Sorghum	nucleus, plastid	22.49	26.51
KXG21616	Sorghum	nucleus, plastid	26.95	25.26
OQU77084	Sorghum	nucleus	27.17	25.0
KXG23504	Sorghum	mitochondrion, nucleus	25.84	24.02

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EntrezGene:8055264	UniProt:C5XMJ2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EES03772	ProteinID:EES03772	ProteinID:EES03772.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF343	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3003G328500	SUPFAM:SSF47954
unigene:Sbi.368	UniParc:UPI0001A85782	RefSeq:XP_002458652.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:65389712..65392593

Molecular Weight (calculated)

50268.8 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.224

Length

449 amino acids

Sequence
(BLAST)

001: MATRNHNNAA AAAAPQLRHH HNRGGVPALG KSKAVPGRTD AMNRRPVLGD IGNLVTVRPA EGKPQPQEQQ VNRPITRSFG AQLVKNAQAN AAIKNAAILP
101: ARHAPRQDRK APAKLPPPED IIALSSDSEQ SRTQSESSAS SVRSRRKAIN TLSSVLSARS KAACGIADKP RQVIEDIDKL DVNDELAVVE YIEDIYTFYK
201: IAQHERRPCD YIEAQVEINA KMRAILVDWI LEVHHKFELM PETLYLTMYI IDQYLSLQPV LRRELQLVGV SAMLIACKYE EIWAPEVNDF ILISDSAYTR
301: EQILSMEKGI LNRLEWNLTV PTVYMFLVRF LKAATLGNKV EKEMENMVFF FAELALMQYD LVTRLPSLVA ASAVYAARLT LKKAPLWTDT LKHHTGFRES
401: EAELIECTKM LVSAHSTAAE SKLRVVYKKY SSEQFGGVAL RPPAVEICK

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.