CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88097
EER90654
EER91363
EER91497	nucleus
EER91919
EER92899
EER95222
EER95545	nucleus
EER99399
EES01579
EES01580
EES04388
EES04403
EES05164
EES05513
EES06920
EES06968
EES10091
EES10850
EES12270
EES12405
EES13089
EES13543
EES17034
EES18282
KXG21918
KXG22711
KXG23408
KXG25408
KXG27072
KXG28235
KXG32708
KXG35997
KXG40187
KXG40336
OQU83613
OQU93149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	EES13543	AT1G04810.1	20706207
AT1G47220.1	KXG27072	AT1G04810.1	20706207
AT1G47220.1	EES10091	AT1G22300.1	20706207
AT1G47220.1	EER88097	AT1G35720.1	20706207
AT1G47220.1	EES05513	AT1G35720.1	20706207
AT1G47220.1	OQU93149	AT1G35720.1	20706207
AT1G47220.1	EES06968	AT1G59750.1	20706207
AT1G47220.1	EES10850	AT1G59750.1	20706207
AT1G47220.1	EES13089	AT1G75750.1	20706207
AT1G47220.1	EES18282	AT1G75750.1	20706207
AT1G47220.1	KXG21918	AT1G75750.1	20706207
AT1G47220.1	KXG40187	AT2G27960.1	20706207
AT1G47220.1	KXG40187	AT2G27970.1	20706207
AT1G47220.1	EER90654	AT2G44160.1	20706207
AT1G47220.1	EES06920	AT3G11630.1	20706207
AT1G47220.1	KXG25408	AT3G27240.1	20706207
AT1G47220.1	EES04403	AT3G48750.1	20706207
AT1G47220.1	KXG40336	AT3G48750.1	20706207
AT1G47220.1	EER91919	AT4G09320.1	20706207
AT1G47220.1	EER99399	AT4G09320.1	20706207
AT1G47220.1	KXG23408	AT4G09320.1	20706207
AT1G47220.1	EES04388	AT4G34870.1	20706207
AT1G47220.1	EES05164	AT4G34870.1	20706207
AT1G47220.1	EER92899	AT4G35830.1	20706207
AT1G47220.1	EES04388	AT4G38740.1	20706207
AT1G47220.1	EES05164	AT4G38740.1	20706207
AT1G47220.1	KXG22711	AT5G11170.1	20706207
AT1G47220.1	KXG32708	AT5G11170.1	20706207
AT1G47220.1	OQU83613	AT5G38480.1	20706207
AT1G47220.1	EER91363	AT5G53560.1	20706207
AT5G43080.1	EER95222	AT1G55890.1	20706207
AT5G43080.1	EES01579	AT1G55890.1	20706207
AT5G43080.1	EES01580	AT1G55890.1	20706207
AT5G43080.1	KXG28235	AT2G05830.1	20706207
AT5G43080.1	KXG40187	AT2G27970.1	20706207
AT5G43080.1	EER91497	AT2G32710.1	20018602
AT5G43080.1	EER95545	AT2G32710.1	20018602
AT5G43080.1	EES17034	AT3G04620.1	20706207
AT5G43080.1	EES04403	AT3G48750.1	20706207
AT5G43080.1	KXG40336	AT3G48750.1	20706207
AT5G43080.1	EES12270	AT4G04020.1	20706207
AT5G43080.1	KXG35997	AT4G16630.1	20706207
AT5G43080.1	EES12405	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048127_P001	Maize	plastid	77.17	61.38
TraesCS4B01G254000.1	Wheat	nucleus	58.53	59.31
TraesCS4D01G253200.1	Wheat	nucleus	37.53	58.61
TraesCS4A01G050700.1	Wheat	nucleus	58.27	58.42
TraesCS4D01G253900.1	Wheat	nucleus	58.01	58.16
TraesCS4A01G051300.1	Wheat	nucleus	48.56	53.94
TraesCS4B01G253100.1	Wheat	nucleus	46.98	52.49
OQU91386	Sorghum	nucleus	34.91	50.96
KRH52056	Soybean	nucleus	27.82	50.24
HORVU4Hr1G069310.3	Barley	nucleus	53.81	49.4
CDY06752	Canola	nucleus	35.43	47.37
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	34.38	45.8
CDY22369	Canola	nucleus	40.16	43.59
AT5G43080.1	Thale cress	nucleus	40.42	43.38
Solyc12g088500.1.1	Tomato	nucleus	39.9	42.94
Bra033658.1-P	Field mustard	nucleus	39.9	42.7
PGSC0003DMT400030176	Potato	nucleus	39.9	42.7
PGSC0003DMT400030222	Potato	nucleus	39.63	42.66
KRH61375	Soybean	nucleus	36.48	42.51
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	40.68	42.47
Solyc12g088530.1.1	Tomato	nucleus	39.37	42.37
Solyc12g088520.1.1	Tomato	nucleus	39.11	41.97
AT1G47220.1	Thale cress	nucleus	35.96	41.9
PGSC0003DMT400055428	Potato	nucleus	40.42	41.85
Solyc04g078310.2.1	Tomato	nucleus	40.68	41.78
CDY66770	Canola	nucleus	39.37	41.44
Solyc12g088470.1.1	Tomato	nucleus	39.11	41.39
CDY17091	Canola	nucleus	38.85	41.34
CDY47596	Canola	nucleus	39.37	41.32
Bra040793.1-P	Field mustard	nucleus	39.37	41.32
KRH15427	Soybean	nucleus, plastid	39.37	41.21
Bra032220.1-P	Field mustard	nucleus	38.58	41.18
AT1G47210.2	Thale cress	nucleus	40.16	41.13
CDY17039	Canola	nucleus	39.11	41.05
CDY17037	Canola	nucleus, plastid	39.11	40.93
CDY23653	Canola	nucleus	38.32	40.9
GSMUA_Achr2P21520_001	Banana	nucleus	38.58	40.83
AT1G47230.2	Thale cress	nucleus, plastid	39.63	40.81
Bra040792.1-P	Field mustard	nucleus, plastid	38.85	40.66
Bra040753.1-P	Field mustard	nucleus, plastid	38.58	40.5
CDY06757	Canola	nucleus, plastid	38.58	40.5
CDY47595	Canola	nucleus, plastid	39.11	40.16
KRH05614	Soybean	nucleus	38.58	40.05
Bra040710.1-P	Field mustard	nucleus	38.85	39.89
KRH61371	Soybean	nucleus	35.96	39.26
KRH61369	Soybean	nucleus	33.6	39.14
PGSC0003DMT400056625	Potato	nucleus	38.85	38.95
KRH52055	Soybean	nucleus	36.48	38.83
EES16237	Sorghum	nucleus, plastid	43.57	38.78
Solyc10g049360.1.1	Tomato	nucleus	37.8	38.1
VIT_03s0091g00280.t01	Wine grape	nucleus	33.6	37.54
KRH61373	Soybean	nucleus, plastid	36.75	37.33
Os03t0208700-00	Rice	nucleus	39.63	36.92
KXG24389	Sorghum	nucleus	19.95	30.16
OQU77084	Sorghum	nucleus	34.91	27.25
KXG21616	Sorghum	nucleus, plastid	32.55	25.89
KXG23504	Sorghum	mitochondrion, nucleus	32.55	25.67
KXG20945	Sorghum	nucleus	25.46	22.88
EES03772	Sorghum	nucleus, plastid	26.51	22.49
EES12664	Sorghum	nucleus	25.46	22.45
EES18429	Sorghum	mitochondrion	25.98	21.52
EES02793	Sorghum	nucleus	24.67	20.3
Os03t0208800-00	Rice	nucleus	19.95	19.14

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:C5WTQ2	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EER95303	ProteinID:EER95303	ProteinID:EER95303.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF231	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3001G462300
SUPFAM:SSF47954	UniParc:UPI0001A83464	RefSeq:XP_002468305.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:73676022..73678864

Molecular Weight (calculated)

42705.2 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.468

Length

381 amino acids

Sequence
(BLAST)

001: MRVRRRRPES EAMESKENSV HSAPPPNRPR GKRKALAELP ASTGPNTNHG SAPRPSKPRT RSAARAEAEA EEARKRQEAE DAARGADLGR PLDSRPPGAE
101: AANAAIAPYV GDIDRYLRSL EVEPLRRPSP DYFQKIQKYI SPKMRAVLVD WLVEVAEDFK LHAETLHLAV SYVDRFLTTN VVTRDKLQLL GVTAMLVAAK
201: YEEIESSKMK VNRYTDITDD TYTKQQVVKM EADLLKSLSF EIGGPTVTTF LRQFIASCRG GNSKSRGKLE SMCSYLAELS LLDYDCISYL PSVVAAACLF
301: VARLTIHPKA SPWNLTLQQN TGYKVFDLQK SIYVIHELQL TIRCPDQQAI REKYMDPKFG CVSTMASPRE IPASFLEDCH K

Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)

001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI

Arabidopsis Description

CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.