CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G224400.1	Wheat	cytosol	95.09	95.09
TraesCS3D01G204400.1	Wheat	cytosol	94.86	94.86
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	95.56	94.68
Os01t0549700-01	Rice	cytosol, plastid	95.33	94.44
KXG22711	Sorghum	cytosol	94.16	93.94
TraesCS3A01G200100.1	Wheat	cytosol	94.39	92.66
VIT_09s0002g06660.t01	Wine grape	cytosol	91.59	91.59
PGSC0003DMT400053566	Potato	cytosol	90.65	90.87
Solyc06g066060.2.1	Tomato	nucleus	86.92	90.73
AT5G11170.1	Thale cress	cytosol	89.72	89.93
PGSC0003DMT400052757	Potato	cytosol	89.25	89.25
KRH47464	Soybean	nucleus	88.78	89.2
KRH44441	Soybean	cytosol, nucleus	88.55	88.97
KRH52452	Soybean	nucleus	88.55	88.76
KRH61783	Soybean	cytosol	88.32	88.52
Bra023311.1-P	Field mustard	cytosol	87.38	87.59
Bra023312.1-P	Field mustard	cytosol	87.15	85.55
CDY51112	Canola	cytosol	87.62	85.23
GSMUA_Achr8P05380_001	Banana	cytosol	92.06	85.1
CDX85725	Canola	cytosol	87.85	85.07
CDX70383	Canola	cytosol	88.32	84.56
VIT_04s0008g05330.t01	Wine grape	cytosol	90.19	84.46
Bra008984.1-P	Field mustard	cytosol	82.71	83.1
Solyc08g061000.2.1	Tomato	nucleus	90.42	79.79
AT5G11200.2	Thale cress	cytosol	89.72	79.01
CDY71952	Canola	cytosol	75.7	77.7
CDX69778	Canola	cytosol	88.55	76.57
CDX85726	Canola	cytosol	87.38	76.33
Bra008983.1-P	Field mustard	cytosol	84.11	76.27
CDX78412	Canola	cytosol	88.55	76.26
CDY51111	Canola	cytosol	42.99	73.9
CDX69777	Canola	cytosol, nucleus, plasma membrane	88.55	72.47
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	83.64	71.89
Zm00001d011150_P005	Maize	cytosol	75.7	69.98
Bra006091.1-P	Field mustard	cytosol	81.31	66.41
CDY56825	Canola	cytosol	30.61	57.46
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	31.31	44.82
EES04512	Sorghum	cytosol	34.35	35.85
EES07819	Sorghum	cytosol	31.31	32.92
OQU76995	Sorghum	cytosol	34.35	28.43
EER91410	Sorghum	cytosol	33.41	28.21
EER91411	Sorghum	cytosol	33.18	28.01
EER95473	Sorghum	cytosol	28.04	24.05
KXG34209	Sorghum	plastid	21.26	20.54
OQU85369	Sorghum	mitochondrion, plastid	24.53	18.32
OQU84655	Sorghum	cytosol	26.87	15.03
KXG29825	Sorghum	cytosol	25.93	12.59

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	UniProt:A0A1B6Q469	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG32708	ProteinID:KXG32708
ProteinID:KXG32708.1	ProteinID:KXG32709.1	ProteinID:KXG32710.1	ProteinID:KXG32711.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G186900	SUPFAM:SSF52540	UniParc:UPI0001C80AF1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:50552617..50560653

Molecular Weight (calculated)

48439.3 Da

IEP (calculated)

5.469

GRAVY (calculated)

-0.232

Length

428 amino acids

Sequence
(BLAST)

001: MGEAKDNEVY EEDLVDYEEE VENVVDGAAT NGSADVVKKG YVGIHSSGFR DFLLKPELLR AIQDCGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSTLQQID PVAGQVAALV LCHTRELAYQ ICHEFERFSK YLPELRVAVF YGGVHIKNHK DLLKNECPHI VVGTPGRILA LARDKDLPLK NVRHFILDEC
201: DKMLESLDMR RDVQEIFKMT PHDKQVMMFS ATLSKEIRPV CKRFMQDPME IYVDDEAKLT LHGLVQHYIK LSEAEKNRKL NDLLDALDFN QVVIFVKSVS
301: RAAELNKLLC ECNFPSICIH SGMTQEERLT RYKNFKEGHK RILVATDLVG RGIDIERVNI VVNYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD
401: VLNQVQERFE VDIKELPEQI DTSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.