Factsheet for AT5G11200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G11170.1	Thale cress	cytosol	87.86	100.0
Bra023311.1-P	Field mustard	cytosol	84.36	96.02
PGSC0003DMT400052757	Potato	cytosol	82.92	94.16
PGSC0003DMT400053566	Potato	cytosol	82.3	93.68
Bra023312.1-P	Field mustard	cytosol	83.95	93.58
VIT_09s0002g06660.t01	Wine grape	cytosol	81.89	92.99
CDX85725	Canola	cytosol	84.57	92.99
CDX70383	Canola	cytosol	85.19	92.62
CDY51112	Canola	cytosol	83.74	92.5
Solyc06g066060.2.1	Tomato	nucleus	77.37	91.71
KRH44441	Soybean	cytosol, nucleus	79.42	90.61
KRH47464	Soybean	nucleus	79.42	90.61
Bra008984.1-P	Field mustard	cytosol	79.22	90.38
KXG22711	Sorghum	cytosol	79.63	90.21
KXG32708	Sorghum	cytosol	79.01	89.72
TraesCS3B01G224400.1	Wheat	cytosol	78.4	89.02
TraesCS1B01G477500.1	Wheat	cytosol	78.81	88.86
TraesCS3D01G204400.1	Wheat	cytosol	78.19	88.78
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	78.81	88.66
Os01t0549700-01	Rice	cytosol, plastid	78.6	88.43
TraesCS1A01G443400.1	Wheat	cytosol	78.81	88.25
TraesCS1D01G451300.1	Wheat	cytosol	76.75	88.18
VIT_04s0008g05330.t01	Wine grape	cytosol	82.3	87.53
TraesCS3A01G200100.1	Wheat	cytosol	77.78	86.7
CDX85726	Canola	cytosol	86.83	86.12
GSMUA_Achr8P05380_001	Banana	cytosol	81.89	85.96
CDX78412	Canola	cytosol	87.65	85.71
CDX69778	Canola	cytosol	87.04	85.45
CDY71952	Canola	cytosol	72.63	84.65
Bra008983.1-P	Field mustard	cytosol	81.28	83.69
CDX69777	Canola	cytosol, nucleus, plasma membrane	89.92	83.56
Solyc08g061000.2.1	Tomato	nucleus	82.3	82.47
CDY51111	Canola	cytosol	41.56	81.12
HORVU1Hr1G095100.5	Barley	cytosol	77.57	80.38
Zm00001d009761_P004	Maize	cytosol	79.63	79.14
Bra006091.1-P	Field mustard	cytosol	78.6	72.9
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	73.25	71.49
Zm00001d011149_P002	Maize	cytosol	23.05	67.47
Zm00001d011150_P005	Maize	cytosol	59.67	62.63
CDY56825	Canola	cytosol	27.98	59.65
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	27.37	44.48
AT1G72730.1	Thale cress	cytosol	30.25	35.51
AT1G54270.1	Thale cress	cytosol	30.04	35.44
AT3G13920.5	Thale cress	cytosol	29.84	34.61
AT1G51380.1	Thale cress	cytosol	27.16	33.67
AT3G19760.1	Thale cress	cytosol	27.57	32.84
AT3G61240.1	Thale cress	cytosol	29.22	28.51
AT4G00660.1	Thale cress	cytosol, mitochondrion	29.22	28.12
AT2G45810.1	Thale cress	cytosol, plastid	30.04	27.65
AT3G53110.1	Thale cress	cytosol	26.95	26.41
AT1G12770.2	Thale cress	mitochondrion, plastid	22.02	19.42
AT5G19210.2	Thale cress	plastid	18.72	19.28

Protein Annotations

MapMan:16.11.1.3	Gene3D:3.40.50.300	EntrezGene:830986	EntrezGene:830990	ProteinID:AED91646.1	ArrayExpress:AT5G11200
EnsemblPlantsGene:AT5G11200	RefSeq:AT5G11200	TAIR:AT5G11200	RefSeq:AT5G11200-TAIR-G	EnsemblPlants:AT5G11200.2	TAIR:AT5G11200.2
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F4JWF6	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0009506	GO:GO:0016787	GO:GO:0016887	GO:GO:0030312
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_001154706.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PO:PO:0000293	PO:PO:0001017	PO:PO:0009010
PO:PO:0009025	PO:PO:0025195	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0001A7B2D1	SEG:seg	:	:	:	:

Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]

Coordinates

chr5:+:3567175..3571015

Molecular Weight (calculated)

55467.9 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.199

Length

486 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.