Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g066060.2.1 | Tomato | nucleus | 70.48 | 85.61 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 72.89 | 84.81 |
| PGSC0003DMT400053566 | Potato | cytosol | 72.49 | 84.54 |
| KXG22711 | Sorghum | cytosol | 72.29 | 83.92 |
| KXG32708 | Sorghum | cytosol | 71.89 | 83.64 |
| PGSC0003DMT400052757 | Potato | cytosol | 71.69 | 83.41 |
| AT5G11170.1 | Thale cress | cytosol | 71.49 | 83.37 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 70.68 | 83.22 |
| KRH47464 | Soybean | nucleus | 70.68 | 82.63 |
| KRH44441 | Soybean | cytosol, nucleus | 70.68 | 82.63 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 71.49 | 82.6 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 70.68 | 82.24 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 71.49 | 82.03 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 70.48 | 82.01 |
| KRH61783 | Soybean | cytosol | 70.28 | 81.97 |
| KRH52452 | Soybean | nucleus | 70.28 | 81.97 |
| Bra023311.1-P | Field mustard | cytosol | 69.68 | 81.26 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 70.48 | 81.25 |
| Os01t0549700-01 | Rice | cytosol, plastid | 70.48 | 81.25 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 75.3 | 80.99 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 70.08 | 80.05 |
| Bra023312.1-P | Field mustard | cytosol | 69.68 | 79.59 |
| CDY51112 | Canola | cytosol | 70.08 | 79.32 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 72.49 | 78.99 |
| CDX85725 | Canola | cytosol | 69.88 | 78.73 |
| CDX70383 | Canola | cytosol | 70.48 | 78.52 |
| CDY71952 | Canola | cytosol | 65.06 | 77.7 |
| Bra008984.1-P | Field mustard | cytosol | 66.06 | 77.23 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 70.88 | 75.27 |
| Solyc08g061000.2.1 | Tomato | nucleus | 72.49 | 74.43 |
| AT5G11200.2 | Thale cress | cytosol | 71.49 | 73.25 |
| Zm00001d009761_P004 | Maize | cytosol | 71.89 | 73.21 |
| CDX85726 | Canola | cytosol | 70.28 | 71.43 |
| CDX69778 | Canola | cytosol | 70.88 | 71.31 |
| CDX78412 | Canola | cytosol | 70.08 | 70.22 |
| Bra008983.1-P | Field mustard | cytosol | 65.86 | 69.49 |
| CDY51111 | Canola | cytosol | 34.34 | 68.67 |
| Zm00001d011149_P002 | Maize | cytosol | 22.49 | 67.47 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 70.68 | 67.3 |
| Bra006091.1-P | Field mustard | cytosol | 64.46 | 61.26 |
| CDY56825 | Canola | cytosol | 25.9 | 56.58 |
| Zm00001d011150_P005 | Maize | cytosol | 52.41 | 56.37 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.31 | 43.81 |
| GSMUA_Achr6P01750_001 | Banana | cytosol, plasma membrane | 28.71 | 34.62 |
| GSMUA_Achr7P19690_001 | Banana | cytosol | 24.3 | 34.28 |
| GSMUA_Achr2P19480_001 | Banana | cytosol | 25.3 | 34.05 |
| GSMUA_Achr8P24670_001 | Banana | cytosol | 25.7 | 34.04 |
| GSMUA_Achr10P... | Banana | cytosol | 25.9 | 33.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.9 | 33.51 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 25.3 | 32.47 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 21.08 | 31.53 |
| GSMUA_Achr5P06410_001 | Banana | cytosol, mitochondrion | 25.1 | 28.6 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 17.27 | 28.01 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 27.31 | 27.98 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 27.51 | 27.85 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 27.11 | 27.44 |
| GSMUA_Achr5P22650_001 | Banana | cytosol, plastid | 12.45 | 27.07 |
| GSMUA_Achr10P... | Banana | nucleus | 24.7 | 25.52 |
| GSMUA_Achr11P... | Banana | cytosol | 26.91 | 23.72 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 24.9 | 23.71 |
| GSMUA_Achr1P01890_001 | Banana | plastid | 18.88 | 17.77 |
| GSMUA_Achr6P27990_001 | Banana | plastid | 16.06 | 16.49 |
Protein Annotations
| MapMan:16.11.1.3 | MapMan:16.4.7.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr3G26010_001 | EnsemblPlants:GSMUA_Achr3P26010_001 | EnsemblPlants:GSMUA_Achr3T26010_001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0SHW7 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000294F5A1 | : | : |
Description
DEAD-box ATP-dependent RNA helicase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr3G26010_001]
Coordinates
chr3:+:26007938..26013356
Molecular Weight (calculated)
57343.2 Da
IEP (calculated)
7.104
GRAVY (calculated)
0.037
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKLGMEFYV LLFELYFYHI KLCCDNWYWS RPNIRAWFKV RVGKGYSWMK LESMLEAGAG GVFDFLNPIS QQLAYTWACL LVIILSAFVT NQMPDLIFKC
101: LPYFWWMSGS SDLLASGESR CNVSYIIMNF IFTQFLYRCM KFLQHECIPQ AILGMDVICQ AKSGMGKTAV FVLSTLQQIE PVAGQVAALV LCHTRELAYQ
201: ICHEFERFST YLPDIKVAVF YGGVHILKHK DILKNECPHI VVGTPGRILA LARDKDLSLK NVRHFILDEC DKMLESLDMR RDVQEIFKMT PHDKQVMMFS
301: ATLSKEIRPV CKRFMQDPME IYVDDEAKLT LHGLVQHYIK LTELEKNRKL NDLLDALDFN QVVIFVKSVN RAAELNKLLV ECNFPSICIH SGMSQEERLT
401: RYKNFKEGLK RILVATDLVG RGIDIERVNI VVNYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD VLNQVQERFE VDIKELPEQI DTSTYMPS
101: LPYFWWMSGS SDLLASGESR CNVSYIIMNF IFTQFLYRCM KFLQHECIPQ AILGMDVICQ AKSGMGKTAV FVLSTLQQIE PVAGQVAALV LCHTRELAYQ
201: ICHEFERFST YLPDIKVAVF YGGVHILKHK DILKNECPHI VVGTPGRILA LARDKDLSLK NVRHFILDEC DKMLESLDMR RDVQEIFKMT PHDKQVMMFS
301: ATLSKEIRPV CKRFMQDPME IYVDDEAKLT LHGLVQHYIK LTELEKNRKL NDLLDALDFN QVVIFVKSVN RAAELNKLLV ECNFPSICIH SGMSQEERLT
401: RYKNFKEGLK RILVATDLVG RGIDIERVNI VVNYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD VLNQVQERFE VDIKELPEQI DTSTYMPS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.